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is_cell and high_confidence columns #245

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Egl-A opened this issue Apr 12, 2024 · 1 comment
Closed

is_cell and high_confidence columns #245

Egl-A opened this issue Apr 12, 2024 · 1 comment

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@Egl-A
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Egl-A commented Apr 12, 2024

Thank you for the cell ranger vdj tool.

I was wondering how exactly the "is_cell" and "high-confidence" columns were computed in the annotation file.
Is it based on sequencer data ? The barcode sequence or the total number of reads ?
Would it be recommended to use all_contig instead of fitlered_contig ?

Thank you in advance!

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Thank you for your interest in Cell Ranger. GitHub Issues are not monitored by our support team. Please e-mail [email protected] for support with Cell Ranger or visit our documentation site at https://www.10xgenomics.com/support/software/cell-ranger.

@github-actions github-actions bot closed this as not planned Won't fix, can't repro, duplicate, stale Apr 12, 2024
@github-actions github-actions bot locked and limited conversation to collaborators Apr 12, 2024
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