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I was wondering how exactly the "is_cell" and "high-confidence" columns were computed in the annotation file.
Is it based on sequencer data ? The barcode sequence or the total number of reads ?
Would it be recommended to use all_contig instead of fitlered_contig ?
Thank you in advance!
The text was updated successfully, but these errors were encountered:
Thank you for the cell ranger vdj tool.
I was wondering how exactly the "is_cell" and "high-confidence" columns were computed in the annotation file.
Is it based on sequencer data ? The barcode sequence or the total number of reads ?
Would it be recommended to use all_contig instead of fitlered_contig ?
Thank you in advance!
The text was updated successfully, but these errors were encountered: