TADbit provides a list of command-line tools that (would) allow to handle all the processing and analysis of NGS data from HiC experiments.
These command lines above would correspond to all the analysis detailed in the notebooks:
### HindIII
# map first end of the read to human reference genome (fragment based mapping)
tadbit map -w HindIII_T0 --fastq FASTQs/Hi-C_HindIII_T0_1.fastq.dsrc --read 1 --index genome/Homo_sapiens_contigs.gem --renz HindIII -C 8
# map other end of the read to human reference genome (fragment based mapping)
tadbit map -w HindIII_T0 --fastq FASTQs/Hi-C_HindIII_T0_2.fastq.dsrc --read 2 --index genome/Homo_sapiens_contigs.gem --renz HindIII -C 8
# parse mapped reads data into a new BED-like file
tadbit parse -w HindIII_T0 --genome genome/Homo_sapiens_contigs.fa --compress_input
# Computes the intersection of the mapping of the two ends, and filter reads
tadbit filter -w HindIII_T0 --apply 1 2 3 4 5 6 7 8 9 10
# normalize Hi-C data
tadbit normalize -w HindIII_T0 -r 300000 --min_count 10
### NcoI
# map first end of the read to human reference genome (fragment based mapping)
tadbit map -w NcoI_T0 --fastq FASTQs/Hi-C_NcoI_T0_1.fastq.dsrc --read 1 --index genome/Homo_sapiens_contigs.gem --renz NcoI -C 8
# map other end of the read to human reference genome (fragment based mapping)
tadbit map -w NcoI_T0 --fastq FASTQs/Hi-C_NcoI_T0_2.fastq.dsrc --read 2 --index genome/Homo_sapiens_contigs.gem --renz NcoI -C 8
# parse mapped reads data into a new BED-like file
tadbit parse -w NcoI_T0 --genome genome/Homo_sapiens_contigs.fa --compress_input
# Computes the intersection of the mapping of the two ends, and filter reads
tadbit filter -w NcoI_T0 --apply 1 2 3 4 5 6 7 8 9 10
# normalize Hi-C data
tadbit normalize -w NcoI_T0 -r 300000 --min_count 10
#### merge HindIII and NcoI experiments
tadbit merge -w both_T0 -w1 HindIII_T0 -w2 NcoI_T0 -r 300000 --perc_zeros 100 --norm --tmpdb /tmp
# normalize Hi-C data at diferent resolutions
tadbit normalize -w both_T0 -r 300000 --min_count 10
tadbit normalize -w both_T0 -r 100000 --min_count 10
# search for TAD and compartments
tadbit segment both_T0 -r 100000 -C 8 -c 18 19 20 -j 3
# modelling: parameter optimization
tadbit model both_T0 --optimize --maxdist 1000:2000:500 --upfreq 0:0.6:0.3 --lowfreq=-0.9:0:0.3 --dcutoff 1.5 2 -r 100000 --crm 18 --beg 68500000 --end 75000000 --input_matrix both_T0/04_normalization/intra_chromosome_nrm_matrices_100000_d31222bc2d/18.mat -C 8 --nmodels 40 --nkeep 20
# modelling: model generation
tadbit model both_T0 --maxdist 1000:2000:500 --upfreq 0:0.6:0.3 --lowfreq=-0.9:0:0.3 --dcutoff 1.5 2 -r 100000 --crm 18 --beg 68500000 --end 75000000 --input_matrix both_T0/04_normalization/intra_chromosome_nrm_matrices_100000_d31222bc2d/18.mat -C 8 --nmodels 500 --nkeep 100
Uploaded here are the folders containing the trace.db files that you can use to browse the metadata of the pipeline processed. These can be accessed with the tadbit describe tool, for example:
$ tadbit describe both_T0
,-------.
| PATHs |
,----.-------.--------------------------------------------------------------------------------.--------------.
| Id | JOBid | Path | Type |
|----+-------+--------------------------------------------------------------------------------+--------------|
| 1 | 1 | 00_merge/decay_corr_dat_300000_f69b503b1b.txt | CORR |
| 2 | 1 | 00_merge/decay_corr_dat_300000_f69b503b1b.png | FIGURE |
| 3 | 1 | 00_merge/eigen_corr_dat_300000_f69b503b1b.txt | CORR |
| 4 | 1 | 00_merge/eigen_corr_dat_300000_f69b503b1b.png | FIGURE |
| 5 | 1 | /home/fransua/Notebooks/Tutorials/Courses/2016_3DAROC/Notebooks/both_T0 | WORKDIR |
| 6 | 1 | ../HindIII_T0 | WORKDIR1 |
| 7 | 1 | ../NcoI_T0 | WORKDIR2 |
| 8 | 1 | ../HindIII_T0/03_filtered_reads/valid_r1-r2_intersection_b51cdf1282.tsv | 2D_BED |
| 9 | 1 | ../NcoI_T0/03_filtered_reads/valid_r1-r2_intersection_b51cdf1282.tsv | 2D_BED |
| 10 | 1 | 03_filtered_reads/valid_r1-r2_intersection_f69b503b1b.tsv | 2D_BED |
| 11 | 1 | ../HindIII_T0/04_normalization/bias_300000_e3af225096.tsv | BIASES |
| 12 | 1 | ../HindIII_T0/04_normalization/bad_columns_300000_95_10_e3af225096.tsv | BAD_COLUMNS |
| 13 | 1 | ../NcoI_T0/04_normalization/bias_300000_e3af225096.tsv | BIASES |
| 14 | 1 | ../NcoI_T0/04_normalization/bad_columns_300000_95_10_e3af225096.tsv | BAD_COLUMNS |
| 15 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_random breaks.tsv | FILTER |
| 16 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_self-circle.tsv | FILTER |
| 17 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_too close from RES.tsv | FILTER |
| 18 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_over-represented.tsv | FILTER |
| 19 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_dangling-end.tsv | FILTER |
| 20 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_too large.tsv | FILTER |
| 21 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_extra dangling-end.tsv | FILTER |
| 22 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_error.tsv | FILTER |
| 23 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_too short.tsv | FILTER |
| 24 | 1 | 03_filtered_reads/all_r1-r2_intersection_f69b503b1b.tsv_duplicated.tsv | FILTER |
| 25 | 2 | 04_normalization/hic-data_300kb_e3af225096.pickle | PICKLE |
| 26 | 2 | 04_normalization/bad_columns_300000_95_10_e3af225096.tsv | BAD_COLUMNS |
| 27 | 2 | 04_normalization/bias_300000_e3af225096.tsv | BIASES |
| 28 | 2 | 04_normalization/interactions_vs_genomic-coords.pdf_300000_e3af225096.pdf | FIGURE |
| 29 | 2 | 04_normalization/intra_chromosome_nrm_images_300000_e3af225096 | FIGURES |
| 30 | 2 | 04_normalization/intra_chromosome_nrm_matrices_300000_e3af225096 | NRM_MATRICES |
| 31 | 2 | 04_normalization/genomic_maps_nrm_300000_e3af225096.pdf | FIGURE |
| 32 | 2 | 04_normalization/genomic_nrm_300000_e3af225096.tsv | NRM_MATRIX |
| 33 | 2 | 04_normalization/intra_chromosome_raw_images_300000_e3af225096 | FIGURES |
| 34 | 2 | 04_normalization/intra_chromosome_raw_matrices_300000_e3af225096 | RAW_MATRICES |
| 35 | 2 | 04_normalization/genomic_maps_raw_300000_e3af225096.pdf | FIGURE |
| 36 | 2 | 04_normalization/genomic_raw_300000_e3af225096.tsv | RAW_MATRIX |
| 37 | 3 | 04_normalization/hic-data_100kb_d31222bc2d.pickle | PICKLE |
| 38 | 3 | 04_normalization/bad_columns_100000_95_10_d31222bc2d.tsv | BAD_COLUMNS |
| 39 | 3 | 04_normalization/bias_100000_d31222bc2d.tsv | BIASES |
| 40 | 3 | 04_normalization/interactions_vs_genomic-coords.pdf_100000_d31222bc2d.pdf | FIGURE |
| 41 | 3 | 04_normalization/intra_chromosome_nrm_images_100000_d31222bc2d | FIGURES |
| 42 | 3 | 04_normalization/intra_chromosome_nrm_matrices_100000_d31222bc2d | NRM_MATRICES |
| 43 | 3 | 04_normalization/genomic_maps_nrm_100000_d31222bc2d.pdf | FIGURE |
| 44 | 3 | 04_normalization/genomic_nrm_100000_d31222bc2d.tsv | NRM_MATRIX |
| 45 | 3 | 04_normalization/intra_chromosome_raw_images_100000_d31222bc2d | FIGURES |
| 46 | 3 | 04_normalization/intra_chromosome_raw_matrices_100000_d31222bc2d | RAW_MATRICES |
| 47 | 3 | 04_normalization/genomic_maps_raw_100000_d31222bc2d.pdf | FIGURE |
| 48 | 3 | 04_normalization/genomic_raw_100000_d31222bc2d.tsv | RAW_MATRIX |
| 49 | 4 | 05_segmentation/compartments_100kb/19_e13fd96b46.tsv | COMPARTMENT |
| 50 | 4 | 05_segmentation/tads_100kb/19_e13fd96b46.tsv | TAD |
| 51 | 4 | 05_segmentation/compartments_100kb/18_e13fd96b46.tsv | COMPARTMENT |
| 52 | 4 | 05_segmentation/tads_100kb/18_e13fd96b46.tsv | TAD |
| 53 | 4 | 05_segmentation/compartments_100kb/20_e13fd96b46.tsv | COMPARTMENT |
| 54 | 4 | 05_segmentation/tads_100kb/20_e13fd96b46.tsv | TAD |
| 55 | 5 | 06_model/8c9b82bc79_chr18_685-750 | DIR |
'----^-------^--------------------------------------------------------------------------------^--------------'
,------.
| JOBs |
,----.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.---------------------.---------------------.-----------.----------------.
| Id | Parameters | Launch_time | Finish_time | Type | Parameters_md5 |
|----+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+---------------------+---------------------+-----------+----------------|
| 1 | force:0 reso:300000 skip_merge:0 tmpdb1:/tmp/trace1_aOgMRPExAV save:genome perc_zeros:100.0 tmpdb:/tmp/trace_sAmxLVYdbD norm:1 tmpdb2:/tmp/trace2_kZVysocLDx skip_comparison:0 workdir1:HindIII_T0 workdir2:NcoI_T0 resolution:ICE | 13/10/2016 09:41:42 | 13/10/2016 09:59:54 | Merge | f69b503b1b |
| 2 | force:0 filter_only:0 fast_filter:0 reso:300000 factor:1 normalization:ICE min_count:10.0 keep:[intra, genome] perc_zeros:95 only_txt:0 | 13/10/2016 10:34:56 | 13/10/2016 11:00:48 | Normalize | e3af225096 |
| 3 | force:0 filter_only:0 fast_filter:0 reso:100000 factor:1 normalization:ICE min_count:10.0 keep:[intra, genome] perc_zeros:95 only_txt:0 | 13/10/2016 10:35:05 | 13/10/2016 12:55:06 | Normalize | d31222bc2d |
| 4 | crms:[18, 19, 20] nosql:0 cpus:8 only_compartments:0 force:0 jobid:3 only_tads:0 perc_zeros:95 reso:100000 | 13/10/2016 14:43:32 | 13/10/2016 14:52:15 | Segment | e13fd96b46 |
| 5 | rand:1 upfreq:(0.0, 0.29999999999999999, 0.59999999999999998) cpus:8 nkeep:20 nmodels:80 reso:100000 nmodels_run:80 scale:(0.01,) end:750 matrix:/home/fransua/Notebooks/Tutorials/Courses/2016_3DAROC/Notebooks/both_T0/04_normalization/intra_chromosome_nrm_matrices_100000_d31222bc2d/18.mat lowfreq:(-0.90000000000000002, -0.60000000000000009, -0.30000000000000016, -2.2204460492503131e-16) ori_beg:68500000.0 analyze:0 maxdist:(1000, 1500, 2000) dcutoff:(1.5, 2.0) perc_zero:90.0 optimize:1 beg:685 job_list:0 ori_end:75000000.0 crm:18 | 14/10/2016 12:19:21 | 14/10/2016 13:05:12 | OPTIM | d24c5554a3 |
| 6 | rand:82 upfreq:(0.0, 0.29999999999999999, 0.59999999999999998) cpus:8 nkeep:100 nmodels:420 reso:100000 nmodels_run:500 scale:(0.01,) end:750 matrix:/home/fransua/Notebooks/Tutorials/Courses/2016_3DAROC/Notebooks/both_T0/04_normalization/intra_chromosome_nrm_matrices_100000_d31222bc2d/18.mat lowfreq:(-0.90000000000000002, -0.60000000000000009, -0.30000000000000016, -2.2204460492503131e-16) ori_beg:68500000.0 analyze:0 maxdist:(1000, 1500, 2000) dcutoff:(1.5, 2.0) perc_zero:90.0 optimize:0 beg:685 job_list:0 ori_end:75000000.0 crm:18 | 14/10/2016 13:24:10 | 14/10/2016 13:31:09 | MODEL | 667e751bda |
'----^------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------^---------------------^---------------------^-----------^----------------'
,----------------.
| FILTER_OUTPUTs |
,----.--------.--------------------.----------.-------.
| Id | PATHid | Name | Count | JOBid |
|----+--------+--------------------+----------+-------|
| 1 | 10 | valid-pairs | 30615902 | 1 |
| 2 | 15 | random breaks | 3079332 | 1 |
| 3 | 16 | self-circle | 507413 | 1 |
| 4 | 17 | too close from RES | 6904926 | 1 |
| 5 | 18 | over-represented | 598392 | 1 |
| 6 | 19 | dangling-end | 1645058 | 1 |
| 7 | 20 | too large | 5517 | 1 |
| 8 | 21 | extra dangling-end | 7290143 | 1 |
| 9 | 22 | error | 29737 | 1 |
| 10 | 23 | too short | 288854 | 1 |
| 11 | 24 | duplicated | 2331281 | 1 |
'----^--------^--------------------^----------^-------'
,-------------------.
| NORMALIZE_OUTPUTs |
,----.-------.-------.-----------.------------.------------------.------------------.------------------.------------------.------------------.------------.--------.
| Id | JOBid | Input | N_columns | N_filtered | CisTrans_nrm_all | CisTrans_nrm_out | CisTrans_raw_all | CisTrans_raw_out | Slope_700kb_10Mb | Resolution | Factor |
|----+-------+-------+-----------+------------+------------------+------------------+------------------+------------------+------------------+------------+--------|
| 1 | 2 | 10 | 10307 | 1013 | 0.454026 | 0.370601 | 0.425948 | 0.345169 | -1.276506 | 300000 | 1 |
| 2 | 3 | 10 | 30895 | 3333 | 0.45603 | 0.409415 | 0.425826 | 0.379802 | -1.123703 | 100000 | 1 |
'----^-------^-------^-----------^------------^------------------^------------------^------------------^------------------^------------------^------------^--------'
,-----------------.
| SEGMENT_OUTPUTs |
,----.-------.----------.------.--------------.------------.------------.
| Id | JOBid | Inputs | TADs | Compartments | Chromosome | Resolution |
|----+-------+----------+------+--------------+------------+------------|
| 1 | 4 | 38,39,10 | 40 | 24 | 19 | 100000 |
| 2 | 4 | 38,39,10 | 54 | 21 | 18 | 100000 |
| 3 | 4 | 38,39,10 | 43 | 15 | 20 | 100000 |
'----^-------^----------^------^--------------^------------^------------'
,-----------------.
| MODELED_REGIONs |
,----.--------.------------.--------.-----.-----.
| Id | PATHid | PARAM_md5 | RESO | BEG | END |
|----+--------+------------+--------+-----+-----|
| 1 | 55 | 8c9b82bc79 | 100000 | 685 | 750 |
'----^--------^------------^--------^-----^-----'
,--------.
| MODELs |
,----.----------.-------.--------------.---------.--------.---------.-------.--------.---------.------.-------------.
| Id | REGIONid | JOBid | OPTPAR_md5 | MaxDist | UpFreq | LowFreq | Scale | Cutoff | Nmodels | Kept | Correlation |
|----+----------+-------+--------------+---------+--------+---------+-------+--------+---------+------+-------------|
| 1 | 1 | 5 | e9de26ffaf06 | 1000 | 0.3 | -0.6 | 0.01 | 2 | 80 | 20 | 0.756294 |
| 2 | 1 | 5 | 750db137b2d1 | 1500 | 0 | 0 | 0.01 | 2 | 80 | 20 | 0.762321 |
| 3 | 1 | 5 | dda9d1aeb287 | 2000 | 0.6 | 0 | 0.01 | 2 | 80 | 20 | 0.760917 |
| 4 | 1 | 5 | c07e5230032f | 2000 | 0 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.767497 |
| 5 | 1 | 5 | 458142625b75 | 2000 | 0 | 0 | 0.01 | 1.5 | 80 | 20 | 0.777149 |
| 6 | 1 | 5 | 7622e1b4237f | 1000 | 0.3 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.749254 |
| 7 | 1 | 5 | d9e781cf4b0d | 2000 | 0.3 | 0 | 0.01 | 1.5 | 80 | 20 | 0.780612 |
| 8 | 1 | 5 | e447de564717 | 2000 | 0.3 | -0.3 | 0.01 | 2 | 80 | 20 | 0.77928 |
| 9 | 1 | 5 | a654bb9de27b | 2000 | 0.3 | -0.9 | 0.01 | 2 | 80 | 20 | 0.776365 |
| 10 | 1 | 5 | 478040030aa6 | 1000 | 0.3 | -0.3 | 0.01 | 2 | 80 | 20 | 0.757046 |
| 11 | 1 | 5 | 4851b5b9466a | 1000 | 0.3 | -0.9 | 0.01 | 2 | 80 | 20 | 0.760546 |
| 12 | 1 | 5 | a66765e2427b | 1000 | 0.3 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.750835 |
| 13 | 1 | 5 | 71d7ab142a43 | 1500 | 0.6 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.740126 |
| 14 | 1 | 5 | e6a5b65b3455 | 2000 | 0.6 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.757808 |
| 15 | 1 | 5 | 7aac515c2565 | 1000 | 0.3 | 0 | 0.01 | 1.5 | 80 | 20 | 0.744847 |
| 16 | 1 | 5 | 299175d71874 | 1500 | 0 | -0.6 | 0.01 | 2 | 80 | 20 | 0.768979 |
| 17 | 1 | 5 | e12160273a55 | 1000 | 0 | 0 | 0.01 | 2 | 80 | 20 | 0.751748 |
| 18 | 1 | 5 | 9194785a7d79 | 2000 | 0.6 | -0.9 | 0.01 | 2 | 80 | 20 | 0.764916 |
| 19 | 1 | 5 | 3a79d25706a6 | 1500 | 0.6 | -0.3 | 0.01 | 2 | 80 | 20 | 0.75549 |
| 20 | 1 | 5 | edcc9e2d4f7e | 1000 | 0 | -0.9 | 0.01 | 2 | 80 | 20 | 0.747057 |
| 21 | 1 | 5 | 17ef7a306618 | 1500 | 0 | -0.3 | 0.01 | 2 | 80 | 20 | 0.762152 |
| 22 | 1 | 5 | 294ad7a92a15 | 1500 | 0 | 0 | 0.01 | 1.5 | 80 | 20 | 0.745106 |
| 23 | 1 | 5 | e4d2b9667f15 | 1500 | 0.6 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.742847 |
| 24 | 1 | 5 | e39923993794 | 1000 | 0 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.745945 |
| 25 | 1 | 5 | 659b368e7c74 | 2000 | 0.3 | 0 | 0.01 | 2 | 80 | 20 | 0.77197 |
| 26 | 1 | 5 | 499863ce06a9 | 1500 | 0.3 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.749441 |
| 27 | 1 | 5 | 614a719c9ca9 | 1000 | 0 | 0 | 0.01 | 1.5 | 80 | 20 | 0.742791 |
| 28 | 1 | 5 | 2154f4b10bc7 | 1500 | 0.3 | 0 | 0.01 | 2 | 80 | 20 | 0.771914 |
| 29 | 1 | 5 | 05fc433ac74c | 1500 | 0.6 | -0.6 | 0.01 | 2 | 80 | 20 | 0.760136 |
| 30 | 1 | 5 | 77e38c6b758e | 1500 | 0 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.739877 |
| 31 | 1 | 5 | fa691d34b74e | 2000 | 0.3 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.768678 |
| 32 | 1 | 5 | ef81d5407076 | 1500 | 0.3 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.740605 |
| 33 | 1 | 5 | 62ab8cf37e29 | 1500 | 0.3 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.744827 |
| 34 | 1 | 5 | 41f3f544aea2 | 2000 | 0 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.76693 |
| 35 | 1 | 5 | 8702c67a69e0 | 1500 | 0.3 | 0 | 0.01 | 1.5 | 80 | 20 | 0.747833 |
| 36 | 1 | 5 | e1fee4941769 | 2000 | 0.6 | 0 | 0.01 | 1.5 | 80 | 20 | 0.770151 |
| 37 | 1 | 5 | a9114df2dd74 | 1000 | 0.3 | 0 | 0.01 | 2 | 80 | 20 | 0.750416 |
| 38 | 1 | 5 | d8681e7c4352 | 2000 | 0 | 0 | 0.01 | 2 | 80 | 20 | 0.770243 |
| 39 | 1 | 5 | 3c7ad3619e93 | 1000 | 0.6 | -0.6 | 0.01 | 2 | 80 | 20 | 0.741154 |
| 40 | 1 | 5 | 975736166336 | 1500 | 0 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.743625 |
| 41 | 1 | 5 | 2d338ea66c6b | 1000 | 0 | -0.6 | 0.01 | 2 | 80 | 20 | 0.747074 |
| 42 | 1 | 5 | e8fb62703ae1 | 1500 | 0.3 | -0.9 | 0.01 | 2 | 80 | 20 | 0.765901 |
| 43 | 1 | 5 | 5271f12571ae | 1000 | 0.6 | 0 | 0.01 | 2 | 80 | 20 | 0.749339 |
| 44 | 1 | 5 | eb3f4d69137f | 1500 | 0.3 | -0.3 | 0.01 | 2 | 80 | 20 | 0.770473 |
| 45 | 1 | 5 | b2c352178958 | 1000 | 0.6 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.744126 |
| 46 | 1 | 5 | c8cfbbbef107 | 2000 | 0.6 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.769087 |
| 47 | 1 | 5 | 7b93e961f1ca | 1500 | 0.6 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.737931 |
| 48 | 1 | 5 | 030e4e30a13e | 1000 | 0 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.743411 |
| 49 | 1 | 5 | 127bd1733460 | 1000 | 0.3 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.746362 |
| 50 | 1 | 5 | b9dab3b0c026 | 2000 | 0 | -0.6 | 0.01 | 2 | 80 | 20 | 0.764604 |
| 51 | 1 | 5 | d503d231414c | 1000 | 0.6 | -0.9 | 0.01 | 1.5 | 80 | 20 | 0.736944 |
| 52 | 1 | 5 | a9488aefff29 | 1500 | 0.6 | -0.9 | 0.01 | 2 | 80 | 20 | 0.761183 |
| 53 | 1 | 5 | a4be8b854de2 | 1000 | 0 | -0.3 | 0.01 | 2 | 80 | 20 | 0.743641 |
| 54 | 1 | 5 | 9b7190093cbb | 2000 | 0.6 | -0.3 | 0.01 | 2 | 80 | 20 | 0.764423 |
| 55 | 1 | 5 | b881919b7ec9 | 2000 | 0 | -0.3 | 0.01 | 2 | 80 | 20 | 0.77263 |
| 56 | 1 | 5 | 9561d8015892 | 1500 | 0 | -0.9 | 0.01 | 2 | 80 | 20 | 0.772466 |
| 57 | 1 | 5 | b8948d8fee68 | 2000 | 0.6 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.76964 |
| 58 | 1 | 5 | 83fbcc753cff | 1000 | 0.6 | 0 | 0.01 | 1.5 | 80 | 20 | 0.740705 |
| 59 | 1 | 5 | 445b6f9088d9 | 1000 | 0 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.745744 |
| 60 | 1 | 5 | 418825bb59c4 | 2000 | 0.3 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.781529 |
| 61 | 1 | 5 | 69262587961d | 1000 | 0.6 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.746539 |
| 62 | 1 | 5 | b8cceb347eae | 1000 | 0.6 | -0.3 | 0.01 | 2 | 80 | 20 | 0.746553 |
| 63 | 1 | 5 | afa3e615fb4c | 1500 | 0.6 | 0 | 0.01 | 2 | 80 | 20 | 0.759346 |
| 64 | 1 | 5 | 73ce881b5b98 | 2000 | 0.6 | -0.6 | 0.01 | 2 | 80 | 20 | 0.764907 |
| 65 | 1 | 5 | 33047c6785af | 2000 | 0.3 | -0.6 | 0.01 | 2 | 80 | 20 | 0.777297 |
| 66 | 1 | 5 | 2779d672face | 2000 | 0 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.767198 |
| 67 | 1 | 5 | 4025290d1344 | 1000 | 0.6 | -0.9 | 0.01 | 2 | 80 | 20 | 0.743615 |
| 68 | 1 | 5 | 9a8c40292403 | 2000 | 0.3 | -0.6 | 0.01 | 1.5 | 80 | 20 | 0.767246 |
| 69 | 1 | 5 | fc29bebe50a2 | 2000 | 0 | -0.9 | 0.01 | 2 | 80 | 20 | 0.77867 |
| 70 | 1 | 5 | f11baca97dd0 | 1500 | 0 | -0.3 | 0.01 | 1.5 | 80 | 20 | 0.737911 |
| 71 | 1 | 5 | 85809b017a8d | 1500 | 0.3 | -0.6 | 0.01 | 2 | 80 | 20 | 0.765391 |
| 72 | 1 | 5 | b9d58f19e150 | 1500 | 0.6 | 0 | 0.01 | 1.5 | 80 | 20 | 0.749536 |
'----^----------^-------^--------------^---------^--------^---------^-------^--------^---------^------^-------------'