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test_install.yml
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name: Installation
on: [push, merge_group, workflow_dispatch]
jobs:
archive:
name: Archive Install
runs-on: ubuntu-22.04
strategy:
matrix:
python-version: [3.9]
steps:
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: actions/checkout@v3
- run: git fetch --prune --unshallow
- run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV
- name: Install apt dependencies
uses: ./.github/actions/install-apt-dependencies
- name: apt
run: |
sudo apt-get update \
&& sudo apt-get install -y \
cmake \
g++
- name: Build suitesparse
run: |
scripts/buildSuiteSparse.sh
- name: Build sundials
run: |
scripts/buildSundials.sh
- name: Build AMICI
run: |
scripts/buildAmici.sh
- name: Install python archive
run: |
scripts/installAmiciArchive.sh
sdist_ubuntu:
name: sdist Install Ubuntu
runs-on: ubuntu-22.04
strategy:
matrix:
python-version: [3.9]
steps:
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: actions/checkout@v3
- run: git fetch --prune --unshallow
- run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV
# install amici dependencies
- name: apt
run: |
sudo apt-get update \
&& sudo apt-get install -y \
g++ \
libatlas-base-dev \
libboost-serialization-dev \
libhdf5-serial-dev \
swig
- name: Create AMICI sdist
run: |
scripts/buildSdist.sh
- name: Install python sdist
run: |
pip3 install -v --user $(ls -t python/sdist/dist/amici-*.tar.gz | head -1)
- name: Test import
run: |
python -m amici
sdist_macos:
name: sdist Install macos
runs-on: macos-latest
strategy:
matrix:
python-version: [3.9]
steps:
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: actions/checkout@v3
- run: git fetch --prune --unshallow
- run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV
# install amici dependencies
- name: homebrew
run: |
brew install hdf5 swig gcc cppcheck libomp boost \
&& brew ls -v boost \
&& brew ls -v libomp \
&& echo LDFLAGS="-L/usr/local/lib/ -L/usr/local/Cellar/boost/1.81.0_1/lib/" >> $GITHUB_ENV \
&& echo CPPFLAGS="-I /usr/local/Cellar/boost/1.81.0_1/include/" >> $GITHUB_ENV
- name: Create AMICI sdist
run: |
scripts/buildSdist.sh
- name: Install python sdist
run: |
pip3 install -v --user $(ls -t python/sdist/dist/amici-*.tar.gz | head -1)
- name: Test import
run: |
python -m amici