diff --git a/tests/benchmark-models/test_petab_benchmark.py b/tests/benchmark-models/test_petab_benchmark.py index f82787494c..2dc650d1b8 100644 --- a/tests/benchmark-models/test_petab_benchmark.py +++ b/tests/benchmark-models/test_petab_benchmark.py @@ -76,8 +76,9 @@ class GradientCheckSettings: rtol_sim=1e-10, ) settings["Oliveira_NatCommun2021"] = GradientCheckSettings( - atol_sim=1e-10, - rtol_sim=1e-10, + # Avoid "root after reinitialization" + atol_sim=1e-12, + rtol_sim=1e-12, ) settings["Okuonghae_ChaosSolitonsFractals2020"] = GradientCheckSettings( atol_sim=1e-14, @@ -144,6 +145,8 @@ def test_benchmark_gradient(model, scale, sensitivity_method, request): model in ( "Blasi_CellSystems2016", + # events with parameter-dependent triggers + # https://github.com/AMICI-dev/AMICI/issues/18 "Oliveira_NatCommun2021", ) and sensitivity_method == SensitivityMethod.adjoint