From e2587ef32dd52ba3fdd51d322037598c0ff88f59 Mon Sep 17 00:00:00 2001 From: Daniel Weindl Date: Thu, 24 Oct 2024 18:52:36 +0200 Subject: [PATCH] Re-enable gradient check for Fujita_SciSignal2010 --- tests/benchmark-models/test_petab_benchmark.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/tests/benchmark-models/test_petab_benchmark.py b/tests/benchmark-models/test_petab_benchmark.py index e36ea34000..f750ba6e7a 100644 --- a/tests/benchmark-models/test_petab_benchmark.py +++ b/tests/benchmark-models/test_petab_benchmark.py @@ -62,7 +62,6 @@ "Smith_BMCSystBiol2013", # excluded due to excessive numerical failures "Crauste_CellSystems2017", - "Fujita_SciSignal2010", } problems_for_gradient_check = list(sorted(problems_for_gradient_check)) @@ -177,6 +176,10 @@ class GradientCheckSettings: settings["Brannmark_JBC2010"] = GradientCheckSettings( ss_sensitivity_mode=amici.SteadyStateSensitivityMode.integrationOnly, ) +settings["Fujita_SciSignal2010"] = GradientCheckSettings( + atol_check=1e-10, + rtol_check=5e-4, +) settings["Giordano_Nature2020"] = GradientCheckSettings( atol_check=1e-6, rtol_check=1e-3, rng_seed=1 )