diff --git a/amrex-hydro/docs_html/.buildinfo b/amrex-hydro/docs_html/.buildinfo index 35b0384..a6d17b2 100644 --- a/amrex-hydro/docs_html/.buildinfo +++ b/amrex-hydro/docs_html/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 -# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 0711d1d4fcdac786d1007c71c2ac352c +# This file records the configuration used when building these files. When it is not found, a full rebuild will be done. +config: 44ebfa6123164b84df3975728c541b5b tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/amrex-hydro/docs_html/BDS.html b/amrex-hydro/docs_html/BDS.html index c07ccb6..07ce3fd 100644 --- a/amrex-hydro/docs_html/BDS.html +++ b/amrex-hydro/docs_html/BDS.html @@ -1,25 +1,23 @@ + + - BDS Algorithm — amrex-hydro 24.10-dev documentation + BDS Algorithm — amrex-hydro 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -36,9 +34,6 @@ amrex-hydro -
- 24.10-dev -
diff --git a/amrex-hydro/docs_html/InOutSolvability.html b/amrex-hydro/docs_html/InOutSolvability.html index aa20f87..b458228 100644 --- a/amrex-hydro/docs_html/InOutSolvability.html +++ b/amrex-hydro/docs_html/InOutSolvability.html @@ -1,25 +1,23 @@ + + - Enforcing inflow-outflow solvability — amrex-hydro 24.10-dev documentation + Enforcing inflow-outflow solvability — amrex-hydro 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -36,9 +34,6 @@ amrex-hydro -
- 24.10-dev -
diff --git a/amrex-hydro/docs_html/Install.html b/amrex-hydro/docs_html/Install.html index c24a48f..fe5d86b 100644 --- a/amrex-hydro/docs_html/Install.html +++ b/amrex-hydro/docs_html/Install.html @@ -1,24 +1,22 @@ + + - Installation Guide — amrex-hydro 24.10-dev documentation + Installation Guide — amrex-hydro 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ amrex-hydro -
- 24.10-dev -
diff --git a/amrex-hydro/docs_html/Introduction.html b/amrex-hydro/docs_html/Introduction.html index ca3afbe..928fe09 100644 --- a/amrex-hydro/docs_html/Introduction.html +++ b/amrex-hydro/docs_html/Introduction.html @@ -1,24 +1,22 @@ + + - Introduction — amrex-hydro 24.10-dev documentation + Introduction — amrex-hydro 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ amrex-hydro -
- 24.10-dev -
@@ -121,7 +116,7 @@ cell-centered velocity update that approximately obeys a divergence constraint).

-

  • Redistribution: AMReX contains schemes to address the “small cell problem” associated with explicit cut +

  • Redistribution: AMReX contains schemes to address the “small cell problem” associated with explicit cut cell algorithms (part of step 4 for problems with embedded boundaries).

  • Helper functions: to do things like compute slopes, create fluxes from face-centered values, and create the convective term from fluxes (used in all but step 2).

    • diff --git a/amrex-hydro/docs_html/Projections.html b/amrex-hydro/docs_html/Projections.html index c3202ab..acc8fb1 100644 --- a/amrex-hydro/docs_html/Projections.html +++ b/amrex-hydro/docs_html/Projections.html @@ -1,25 +1,23 @@ + + - Projection Methods — amrex-hydro 24.10-dev documentation + Projection Methods — amrex-hydro 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -38,9 +36,6 @@ amrex-hydro -
    - 24.10-dev -
    @@ -184,7 +179,7 @@ Both classes provide member functions getLinOp and getMLMG to access the underlying objects and allow for modification of the linear operator and multigrid properties if needed. -Details of the linear solver implementations are in the Linear Solvers +Details of the linear solver implementations are in the Linear Solvers section of AMReX’s documentation.

    Both Projector classes provide the following parameters, which can be set in an inputs file or on the command line. For the MacProjector, these must be preceded by diff --git a/amrex-hydro/docs_html/Schemes.html b/amrex-hydro/docs_html/Schemes.html index c88c756..bd41993 100644 --- a/amrex-hydro/docs_html/Schemes.html +++ b/amrex-hydro/docs_html/Schemes.html @@ -1,25 +1,23 @@ + + - Advection schemes — amrex-hydro 24.10-dev documentation + Advection schemes — amrex-hydro 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -38,9 +36,6 @@ amrex-hydro -

    - 24.10-dev -
    diff --git a/amrex-hydro/docs_html/Utilities.html b/amrex-hydro/docs_html/Utilities.html index 6cb3e0a..bb2c42c 100644 --- a/amrex-hydro/docs_html/Utilities.html +++ b/amrex-hydro/docs_html/Utilities.html @@ -1,25 +1,23 @@ + + - Helper functions — amrex-hydro 24.10-dev documentation + Helper functions — amrex-hydro 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -38,9 +36,6 @@ amrex-hydro -
    - 24.10-dev -
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b/amrex-hydro/docs_html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 differ diff --git a/amrex-hydro/docs_html/_static/js/versions.js b/amrex-hydro/docs_html/_static/js/versions.js new file mode 100644 index 0000000..818bc99 --- /dev/null +++ b/amrex-hydro/docs_html/_static/js/versions.js @@ -0,0 +1,224 @@ +const themeFlyoutDisplay = "hidden"; +const themeVersionSelector = "True"; +const themeLanguageSelector = "True"; + +if (themeFlyoutDisplay === "attached") { + function renderLanguages(config) { + if (!config.projects.translations.length) { + return ""; + } + + const languagesHTML = ` +
    +
    Languages
    + ${config.projects.translations + .map( + (translation) => ` +
    + ${translation.language.code} +
    + `, + ) + .join("\n")} +
    + `; + return languagesHTML; + } + + function renderVersions(config) { + if (!config.versions.active.length) { + return ""; + } + const versionsHTML = ` +
    +
    Versions
    + ${config.versions.active + .map( + (version) => ` +
    + ${version.slug} +
    + `, + ) + .join("\n")} +
    + `; + return versionsHTML; + } + + function renderDownloads(config) { + if (!Object.keys(config.versions.current.downloads).length) { + return ""; + } + const downloadsNameDisplay = { + pdf: "PDF", + epub: "Epub", + htmlzip: "HTML", + }; + + const downloadsHTML = ` +
    +
    Downloads
    + ${Object.entries(config.versions.current.downloads) + .map( + ([name, url]) => ` +
    + ${downloadsNameDisplay[name]} +
    + `, + ) + .join("\n")} +
    + `; + return downloadsHTML; + } + + document.addEventListener("readthedocs-addons-data-ready", function (event) { + const config = event.detail.data(); + + const flyout = ` +
    + + Read the Docs + v: ${config.versions.current.slug} + + +
    +
    + ${renderLanguages(config)} + ${renderVersions(config)} + ${renderDownloads(config)} +
    +
    On Read the Docs
    +
    + Project Home +
    +
    + Builds +
    +
    + Downloads +
    +
    +
    +
    Search
    +
    + + +
    + +
    +
    + + Hosted by Read the Docs + +
    +
    + `; + + // Inject the generated flyout into the body HTML element. + document.body.insertAdjacentHTML("beforeend", flyout); + + // Trigger the Read the Docs Addons Search modal when clicking on the "Search docs" input from inside the flyout. + document + .querySelector("#flyout-search-form") + .addEventListener("focusin", () => { + const event = new CustomEvent("readthedocs-search-show"); + document.dispatchEvent(event); + }); + }) +} + +if (themeLanguageSelector || themeVersionSelector) { + function onSelectorSwitch(event) { + const option = event.target.selectedIndex; + const item = event.target.options[option]; + window.location.href = item.dataset.url; + } + + document.addEventListener("readthedocs-addons-data-ready", function (event) { + const config = event.detail.data(); + + const versionSwitch = document.querySelector( + "div.switch-menus > div.version-switch", + ); + if (themeVersionSelector) { + let versions = config.versions.active; + if (config.versions.current.hidden || config.versions.current.type === "external") { + versions.unshift(config.versions.current); + } + const versionSelect = ` + + `; + + versionSwitch.innerHTML = versionSelect; + versionSwitch.firstElementChild.addEventListener("change", onSelectorSwitch); + } + + const languageSwitch = document.querySelector( + "div.switch-menus > div.language-switch", + ); + + if (themeLanguageSelector) { + if (config.projects.translations.length) { + // Add the current language to the options on the selector + let languages = config.projects.translations.concat( + config.projects.current, + ); + languages = languages.sort((a, b) => + a.language.name.localeCompare(b.language.name), + ); + + const languageSelect = ` + + `; + + languageSwitch.innerHTML = languageSelect; + languageSwitch.firstElementChild.addEventListener("change", onSelectorSwitch); + } + else { + languageSwitch.remove(); + } + } + }); +} + +document.addEventListener("readthedocs-addons-data-ready", function (event) { + // Trigger the Read the Docs Addons Search modal when clicking on "Search docs" input from the topnav. + document + .querySelector("[role='search'] input") + .addEventListener("focusin", () => { + const event = new CustomEvent("readthedocs-search-show"); + document.dispatchEvent(event); + }); +}); \ No newline at end of file diff --git a/amrex-hydro/docs_html/_static/language_data.js b/amrex-hydro/docs_html/_static/language_data.js index 367b8ed..c7fe6c6 100644 --- a/amrex-hydro/docs_html/_static/language_data.js +++ b/amrex-hydro/docs_html/_static/language_data.js @@ -1,13 +1,6 @@ /* - * language_data.js - * ~~~~~~~~~~~~~~~~ - * * This script contains the language-specific data used by searchtools.js, * namely the list of stopwords, stemmer, scorer and splitter. - * - * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * */ var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"]; diff --git a/amrex-hydro/docs_html/_static/searchtools.js b/amrex-hydro/docs_html/_static/searchtools.js index b08d58c..2c774d1 100644 --- a/amrex-hydro/docs_html/_static/searchtools.js +++ b/amrex-hydro/docs_html/_static/searchtools.js @@ -1,12 +1,5 @@ /* - * searchtools.js - * ~~~~~~~~~~~~~~~~ - * * Sphinx JavaScript utilities for the full-text search. - * - * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * */ "use strict"; @@ -20,7 +13,7 @@ if (typeof Scorer === "undefined") { // and returns the new score. /* score: result => { - const [docname, title, anchor, descr, score, filename] = result + const [docname, title, anchor, descr, score, filename, kind] = result return score }, */ @@ -47,6 +40,14 @@ if (typeof Scorer === "undefined") { }; } +// Global search result kind enum, used by themes to style search results. +class SearchResultKind { + static get index() { return "index"; } + static get object() { return "object"; } + static get text() { return "text"; } + static get title() { return "title"; } +} + const _removeChildren = (element) => { while (element && element.lastChild) element.removeChild(element.lastChild); }; @@ -64,9 +65,13 @@ const _displayItem = (item, searchTerms, highlightTerms) => { const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY; const contentRoot = document.documentElement.dataset.content_root; - const [docName, title, anchor, descr, score, _filename] = item; + const [docName, title, anchor, descr, score, _filename, kind] = item; let listItem = document.createElement("li"); + // Add a class representing the item's type: + // can be used by a theme's CSS selector for styling + // See SearchResultKind for the class names. + listItem.classList.add(`kind-${kind}`); let requestUrl; let linkUrl; if (docBuilder === "dirhtml") { @@ -115,8 +120,10 @@ const _finishSearch = (resultCount) => { "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories." ); else - Search.status.innerText = _( - "Search finished, found ${resultCount} page(s) matching the search query." + Search.status.innerText = Documentation.ngettext( + "Search finished, found one page matching the search query.", + "Search finished, found ${resultCount} pages matching the search query.", + resultCount, ).replace('${resultCount}', resultCount); }; const _displayNextItem = ( @@ -138,7 +145,7 @@ const _displayNextItem = ( else _finishSearch(resultCount); }; // Helper function used by query() to order search results. -// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Each input is an array of [docname, title, anchor, descr, score, filename, kind]. // Order the results by score (in opposite order of appearance, since the // `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. const _orderResultsByScoreThenName = (a, b) => { @@ -248,6 +255,7 @@ const Search = { searchSummary.classList.add("search-summary"); searchSummary.innerText = ""; const searchList = document.createElement("ul"); + searchList.setAttribute("role", "list"); searchList.classList.add("search"); const out = document.getElementById("search-results"); @@ -318,7 +326,7 @@ const Search = { const indexEntries = Search._index.indexentries; // Collect multiple result groups to be sorted separately and then ordered. - // Each is an array of [docname, title, anchor, descr, score, filename]. + // Each is an array of [docname, title, anchor, descr, score, filename, kind]. const normalResults = []; const nonMainIndexResults = []; @@ -337,6 +345,7 @@ const Search = { null, score + boost, filenames[file], + SearchResultKind.title, ]); } } @@ -354,6 +363,7 @@ const Search = { null, score, filenames[file], + SearchResultKind.index, ]; if (isMain) { normalResults.push(result); @@ -475,6 +485,7 @@ const Search = { descr, score, filenames[match[0]], + SearchResultKind.object, ]); }; Object.keys(objects).forEach((prefix) => @@ -585,6 +596,7 @@ const Search = { null, score, filenames[file], + SearchResultKind.text, ]); } return results; diff --git a/amrex-hydro/docs_html/bcs.html b/amrex-hydro/docs_html/bcs.html index d8c4641..fb7c12a 100644 --- a/amrex-hydro/docs_html/bcs.html +++ b/amrex-hydro/docs_html/bcs.html @@ -1,25 +1,23 @@ + + - Boundary conditions — amrex-hydro 24.10-dev documentation + Boundary conditions — amrex-hydro 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -38,9 +36,6 @@ amrex-hydro -
    - 24.10-dev -
    @@ -94,7 +89,7 @@

    Boundary conditions

    AMReX-Hydro uses underlying AMReX functionality in implementing boundary conditions -(see AMReX’s documentation section Boundary Conditions). +(see AMReX’s documentation section Boundary Conditions). Physical boundary conditions, such as inflow, outflow, slip/no-slip walls, etc. are ultimately linked to mathematical Dirichlet or Neumann conditions. @@ -114,13 +109,13 @@ If a position-dependent BCs are passed in, they take precedent and single BC per face BCRecs are ignored.

    The MacProjector supports mixed boundary conditions by making use of the underlying linear solver’s -Robin BC (Boundary Conditions) option. Robin boundary conditions are formulated as +Robin BC (Boundary Conditions) option. Robin boundary conditions are formulated as \(a\phi + b\frac{\partial\phi}{\partial n} = f\). \(a\), \(b\), and \(f\) are each a cell-centered (real) MultiFab that carries the relevant values in the first ghost cell. All three must be specified on each level with a call to -setLevelBC (see Boundary Conditions for usage).

    +setLevelBC (see Boundary Conditions for usage).

    The NodalProjector can support mixed boundary conditions through the use of an overset mask -(see Boundary Conditions). +(see Boundary Conditions). The overset mask specifies a Dirichlet BC with 0 (meaning no solve is needed since the solution is known) or Neumann with 1 (meaning do the solve). Note this is an integer (not bool) MultiFab, so the values must be only either 0 or 1.

    diff --git a/amrex-hydro/docs_html/genindex.html b/amrex-hydro/docs_html/genindex.html index da01a1e..2885160 100644 --- a/amrex-hydro/docs_html/genindex.html +++ b/amrex-hydro/docs_html/genindex.html @@ -1,23 +1,21 @@ + + - Index — amrex-hydro 24.10-dev documentation + Index — amrex-hydro 24.11-dev documentation - + - - - - - - - + + + + + @@ -34,9 +32,6 @@ amrex-hydro -
    - 24.10-dev -
    diff --git a/amrex-hydro/docs_html/index.html b/amrex-hydro/docs_html/index.html index 2b992f4..1417a92 100644 --- a/amrex-hydro/docs_html/index.html +++ b/amrex-hydro/docs_html/index.html @@ -1,25 +1,23 @@ + + - Welcome to AMReX-Hydro’s Documentation — amrex-hydro 24.10-dev documentation + Welcome to AMReX-Hydro’s Documentation — amrex-hydro 24.11-dev documentation - + - - - - - - - - + + + + + + @@ -37,9 +35,6 @@ amrex-hydro -
    - 24.10-dev -
    diff --git a/amrex-hydro/docs_html/objects.inv b/amrex-hydro/docs_html/objects.inv index 79bc8de..c0e0a1f 100644 Binary files a/amrex-hydro/docs_html/objects.inv and b/amrex-hydro/docs_html/objects.inv differ diff --git a/amrex-hydro/docs_html/references.html b/amrex-hydro/docs_html/references.html index c1ee0e0..738da2d 100644 --- a/amrex-hydro/docs_html/references.html +++ b/amrex-hydro/docs_html/references.html @@ -1,24 +1,22 @@ + + - References — amrex-hydro 24.10-dev documentation + References — amrex-hydro 24.11-dev documentation - + - - - - - - - + + + + + @@ -36,9 +34,6 @@ amrex-hydro -
    - 24.10-dev -
    diff --git a/amrex-hydro/docs_html/search.html b/amrex-hydro/docs_html/search.html index 25dcf94..5112d60 100644 --- a/amrex-hydro/docs_html/search.html +++ b/amrex-hydro/docs_html/search.html @@ -1,24 +1,22 @@ + + - Search — amrex-hydro 24.10-dev documentation + Search — amrex-hydro 24.11-dev documentation - + - - - - - - - + + + + + @@ -37,9 +35,6 @@ amrex-hydro -
    - 24.10-dev -
    diff --git a/amrex-hydro/docs_html/searchindex.js b/amrex-hydro/docs_html/searchindex.js index 6cc69df..510e66e 100644 --- a/amrex-hydro/docs_html/searchindex.js +++ b/amrex-hydro/docs_html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"Advection schemes": [[5, null]], "Advective BC details": [[7, "advective-bc-details"]], "BDS Algorithm": [[0, null], [5, "bds-algorithm"]], "Boundary conditions": [[7, null]], "Clone and Configure AMReX-Hydro": [[2, "clone-and-configure-amrex-hydro"]], "Clone, Configure and Install AMReX": [[2, "clone-configure-and-install-amrex"]], "Computing Fluxes": [[6, "computing-fluxes"]], "Constructing the advective term": [[6, "constructing-the-advective-term"]], "Contents:": [[8, null]], "EB Slopes": [[6, "eb-slopes"]], "Enforcing inflow-outflow solvability": [[1, null], [6, "enforcing-inflow-outflow-solvability"]], "Extensive": [[6, "extensive"]], "Extensive fluxes": [[6, "extensive-fluxes"]], "Godunov Methods": [[5, "godunov-methods"]], "Godunov with Embedded Boundaries (EBGodunov)": [[5, "godunov-with-embedded-boundaries-ebgodunov"]], "Helper functions": [[6, null]], "Installation Guide": [[2, null]], "Intensive": [[6, "intensive"]], "Intensive fluxes": [[6, "intensive-fluxes"]], "Introduction": [[3, null]], "MAC Projection": [[4, "mac-projection"]], "Make The Object Files": [[2, "make-the-object-files"]], "Method of Lines (MOL)": [[5, "method-of-lines-mol"]], "Method of Lines with Embedded Boundaries (EBMOL)": [[5, "method-of-lines-with-embedded-boundaries-ebmol"]], "Mixed Boundary Conditions": [[7, "mixed-boundary-conditions"]], "Nodal Projection": [[4, "nodal-projection"]], "Notation": [[5, "notation"], [6, "notation"]], "Post-MAC": [[0, "post-mac"], [5, "post-mac"]], "Post-MAC (API ref. 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MOL::ExtrapVelToFaces)": [[5, "pre-mac-api-ref-mol-extrapveltofaces"]], "Projection Methods": [[4, null]], "References": [[8, null], [9, null]], "Slopes": [[6, "slopes"]], "Welcome to AMReX-Hydro\u2019s Documentation": [[8, null]]}, "docnames": ["BDS", "InOutSolvability", "Install", "Introduction", "Projections", "Schemes", "Utilities", "bcs", "index", "references"], "envversion": {"sphinx": 63, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx.ext.viewcode": 1, "sphinxcontrib.bibtex": 9}, "filenames": ["BDS.rst", "InOutSolvability.rst", "Install.rst", "Introduction.rst", "Projections.rst", "Schemes.rst", "Utilities.rst", "bcs.rst", "index.rst", "references.rst"], "indexentries": {}, "objects": {}, "objnames": {}, "objtypes": {}, 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