testing_docker.yaml

name: Testing Docker image
on:
  push:
    branches:
      - main
      - develop
  pull_request:
    branches:
      - main
      - develop
    tags:
      - v*
  schedule:
    # Every 01:00 Sunday re-run the test on the main branch
    - cron: '0 1 * * 0'
  workflow_dispatch:

jobs:
  docker_testing:
    runs-on: ubuntu-latest
    name: Running Docker testing
    steps:
      - name: Fetch source code
        uses: actions/checkout@v2
      - name: Current python version
        run: python3 --version || echo python3 not installed
      - name: Install Python 3.8
        uses: actions/setup-python@v2
        with:
          python-version: '3.8'
      - name: Updated python version
        run: python3 --version
      - name: Install python dependencies
        run: |
             python3 -m pip install -U pip
             python3 -m pip install -U numpy Pillow
      - name: Create folders
        run: |
             mkdir ./inputs && chmod 777 ./inputs
             mkdir ./outputs && chmod 777 ./outputs
      - name: Download testing data files
        run: |
             curl -X GET https://de.cyverse.org/dl/d/3CBFD03C-C82E-4EDE-A8E5-DD4DBD45C696/orthomosaic.tif > inputs/orthomosaic.tif
             curl -X GET https://de.cyverse.org/dl/d/FD32B0CE-DBAB-4A44-B8A6-0E9AA4555A31/experiment.yaml > inputs/experiment.yaml
             mkdir -p test_data
             curl -X GET https://de.cyverse.org/dl/d/D06CA5FF-34CE-46F6-91BD-C93167678941/orthomosaicmask_1.tif > test_data/orthomosaic_mask.tif
      - name: Folder contents
        run: |
             echo "Current folder" && ls -l
             echo "Inputs folder" && ls -l ./inputs
             echo "Outputs folder" && ls -l ./outputs
      - name: Build docker image
        run: docker build -t soilmask_test:latest ./
      - name: Compress docker image
        run: docker save soilmask_test:latest | gzip -7 -c - > soilmask_test_image.tar.gz
      - name: Upload docker image
        uses: actions/upload-artifact@v2
        with:
          name: soilmask_test_image
          path: soilmask_test_image.tar.gz
      - name: Run docker test
        run: docker run --rm -v "${PWD}/inputs:/inputs" -v "${PWD}/outputs:/outputs" soilmask_test:latest --working_space /outputs --metadata /inputs/experiment.yaml /inputs/orthomosaic.tif
      - name: Output folder contents
        run: echo "Outputs folder" && ls -l ./outputs
      - name: Check outputs
        run: |
             chmod +x "./.github/workflows/docker_test_check.sh"
             "./.github/workflows/docker_test_check.sh"
      - name: Data quality check
        run: python3 tests/compare_image_pixels.py './test_data/orthomosaic_mask.tif' './outputs/orthomosaic_mask.tif'

  artifact_cleanup:
    runs-on: ubuntu-latest
    needs: [docker_testing]
    name: Cleanup artifacts upon success
    steps:
      - name: Remove docker artifact
        uses: geekyeggo/delete-artifact@v1
        with:
          name: soilmask_test_image