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base repository: AgrDataSci/ClimMob-analysis
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base: v1.2
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head repository: AgrDataSci/ClimMob-analysis
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compare: master
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Showing with 5,303 additions and 3,678 deletions.
  1. +4 −0 .gitignore
  2. 0 ClimMob-analysis.Rproj
  3. +276 −1,504 ClimMob.R
  4. +395 −90 LICENSE
  5. +34 −0 NEWS.md
  6. +0 −25 R/check_packages.R
  7. +0 −801 R/functions.R
  8. +0 −585 R/participant_report.R
  9. +6 −9 README.md
  10. +17 −0 modules/00_check_packages.R
  11. +1,212 −0 modules/01_functions.R
  12. +392 −0 modules/02_organize_ranking_data.R
  13. +192 −0 modules/03_organize_quantitative_data.R
  14. +229 −0 modules/04_overview_and_summaries.R
  15. +84 −0 modules/05_spatial_overview.R
  16. +406 −0 modules/06_PlackettLuce_models.R
  17. +56 −0 modules/07_PLADMM.R
  18. +331 −0 modules/08_PlackettLuce_tree.R
  19. +165 −0 modules/09_agroclimatic_insights.R
  20. +124 −0 modules/10_quantitative_insights.R
  21. +293 −0 modules/12_participant_report.R
  22. BIN modules/example-data-structure.rda
  23. BIN report/1000FARMS.jpg
  24. 0 report/citation_style.csl
  25. +152 −29 report/climmob.bib
  26. BIN report/climmob_logo.png
  27. +239 −465 report/mainreport.Rmd
  28. 0 report/{ → old-files}/covar_analysis.Rmd
  29. 0 report/{ → old-files}/covar_models.Rmd
  30. BIN report/old-files/frowning_face.png
  31. BIN report/old-files/happy_face.png
  32. 0 report/{ → old-files}/mainreport_failed.Rmd
  33. 0 report/{ → old-files}/mainreport_no_traits.Rmd
  34. BIN report/old-files/neutral_face.png
  35. +79 −0 report/old-files/other_trait_summaries.Rmd
  36. +50 −0 report/old-files/participant_report_main.Rmd
  37. +0 −148 report/other_trait_summaries.Rmd
  38. +0 −22 report/participant_report.Rmd
  39. BIN report/participant_report.docx
  40. +65 −0 report/participant_report_main.Rmd
  41. +12 −0 report/participant_report_multilanguage_text.csv
  42. +74 −0 report/report_multilanguage_text.csv
  43. BIN report/word_style_infosheet.docx
  44. BIN report/word_style_template.docx
  45. +416 −0 run-local/set-up-parameters-for-local-analysis.R
4 changes: 4 additions & 0 deletions .gitignore
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@@ -4,6 +4,7 @@
*.DS_Store
*.html
*.log
Rplots.pdf

# Session Data files
.RData
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output
dev
reportcm
run-local/local
tests
tempmap
Empty file modified ClimMob-analysis.Rproj
100644 → 100755
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