How can I convert the raw

[QQhuan]

No description provided.

[QQhuan]

Dear AlanRace,
I have a dataset, which from Thermo data, I want to got the imzML data by using this tools. What command should I input?
My command and the errors are as follows:

java -jar jimzMLConverter-2.1.1.jar imzML --image-dimensions 200 2

00 -o "E:\mass_spectrum_data\DGC\imzML" "E:\mass_spectrum_data\DGC\20210414\GC072N_DGC_83892_E001213_F1_R1.raw"

4月 21, 2024 5:13:22 下午 com.alanmrace.jimzmlconverter.MainCommand convert
信息: Converting file E:\mass_spectrum_data\DGC\20210414\GC072N_DGC_83892_E001213_F1_R1.raw
4月 21, 2024 5:13:22 下午 com.alanmrace.jimzmlconverter.MainCommand generatemzMLFiles
信息: Detected Thermo RAW file
Checking for latest version of ProteoWizard in C:\Users\A\AppData\Local\Apps
"C:\Program Files\ProteoWizard\ProteoWizard 3.0.24100.098a63b\msconvert.exe" "E:\mass_spectrum_data\DGC\20210414\GC072N_DGC_83892_E001213_F1_R1.raw" --zlib --simAsSpectra --srmAsSpectra -o "E:\mass_spectrum_data\DGC\imzML"
format: mzML
m/z: Compression-Zlib, 64-bit
intensity: Compression-Zlib, 32-bit
rt: Compression-Zlib, 64-bit
ByteOrder_LittleEndian
indexed="true"
outputPath: E:\mass_spectrum_data\DGC\imzML
extension: .mzML
contactFilename:
runIndexSet:

spectrum list filters:

chromatogram list filters:

filenames:
E:\mass_spectrum_data\DGC\20210414\GC072N_DGC_83892_E001213_F1_R1.raw

processing file: E:\mass_spectrum_data\DGC\20210414\GC072N_DGC_83892_E001213_F1_R1.raw
calculating source file checksums

writing output file: E:\mass_spectrum_data\DGC\imzML\GC072N_DGC_83892_E001213_F1_R1.mzML

4月 21, 2024 5:14:14 下午 com.alanmrace.jimzmlconverter.MainCommand convert
严重: No .udp or .txt file supplied for the 0th file E:\mass_spectrum_data\DGC\20210414\GC072N_DGC_83892_E001213_F1_R1.raw so assuming non-imaging data
Exception in thread "main" java.lang.StringIndexOutOfBoundsException: begin 0, end -1, length 50
at java.base/java.lang.String.checkBoundsBeginEnd(String.java:4608)
at java.base/java.lang.String.substring(String.java:2711)
at com.alanmrace.jimzmlparser.obo.OBO.(OBO.java:115)
at com.alanmrace.jimzmlparser.obo.OBO.(OBO.java:119)
at com.alanmrace.jimzmlparser.obo.OBO.(OBO.java:119)
at com.alanmrace.jimzmlparser.obo.OBO.loadOntologyFromFile(OBO.java:252)
at com.alanmrace.jimzmlparser.obo.OBO.getOBO(OBO.java:169)
at com.alanmrace.jimzmlconverter.ImzMLConverter.getOBOTerm(ImzMLConverter.java:209)
at com.alanmrace.jimzmlconverter.ImzMLConverter.(ImzMLConverter.java:95)
at com.alanmrace.jimzmlconverter.MzMLToImzMLConverter.(MzMLToImzMLConverter.java:67)
at com.alanmrace.jimzmlconverter.ThermoMzMLToImzMLConverter.(ThermoMzMLToImzMLConverter.java:29)
at com.alanmrace.jimzmlconverter.MainCommand.convert(MainCommand.java:265)
at com.alanmrace.jimzmlconverter.MainCommand.main(MainCommand.java:186)

    Thank u for your attention!