From 050276656ba3c774acff311986b8989b4e455554 Mon Sep 17 00:00:00 2001 From: Richard Samuelson Date: Fri, 8 Dec 2023 13:34:42 -0800 Subject: [PATCH 1/4] Edited copy; normalized file names; changed templates (jolla -> trestles). --- about.qmd | 33 +++++++++--------- index.qmd | 15 ++++---- members.qmd | 5 +-- members/benbumpus.qmd | 4 +-- members/georgerauta.qmd | 6 ++-- members/{ben.png => images/benbumpus.png} | Bin .../{james.png => images/jamesfairbanks.png} | Bin members/{ => images}/lukemorris.jpeg | Bin members/{ => images}/profile.jpg | Bin members/images/richardsamuelson.jpg | Bin 0 -> 40299 bytes .../{TylerHanks.png => images/tylerhanks.png} | Bin members/{wilmer.jpg => images/wilmerleal.jpg} | Bin members/jamesfairbanks.qmd | 4 +-- members/lukemorris.qmd | 4 +-- members/patrickstokes.qmd | 6 ++-- members/richardsamuelson.qmd | 8 +++++ members/taylorfrederick.qmd | 6 ++-- members/{tyler.qmd => tylerhanks.qmd} | 4 +-- members/{wilmer.qmd => wilmerleal.qmd} | 4 +-- 19 files changed, 56 insertions(+), 43 deletions(-) rename members/{ben.png => images/benbumpus.png} (100%) rename members/{james.png => images/jamesfairbanks.png} (100%) rename members/{ => images}/lukemorris.jpeg (100%) rename members/{ => images}/profile.jpg (100%) create mode 100644 members/images/richardsamuelson.jpg rename members/{TylerHanks.png => images/tylerhanks.png} (100%) rename members/{wilmer.jpg => images/wilmerleal.jpg} (100%) create mode 100644 members/richardsamuelson.qmd rename members/{tyler.qmd => tylerhanks.qmd} (91%) rename members/{wilmer.qmd => wilmerleal.qmd} (95%) diff --git a/about.qmd b/about.qmd index 2bc1f11..289643a 100644 --- a/about.qmd +++ b/about.qmd @@ -2,7 +2,7 @@ title: "About" image: _assets/gatas_logo.png about: - template: jolla + template: trestles image-shape: rectangle links: @@ -14,19 +14,20 @@ about: href: https://www.algebraicjulia.org/ --- -The GATAS Lab AlgebraicJulia aims to create novel approaches -to scientific computing based on applied category theory to -solve computational science and engineering problems. +The GATAS laboratory uses applied category to develop novel approaches to scientific +computing. We are domain-agnostic, solving problems in +[dynamics](https://arxiv.org/abs/2105.12282), +[physics](https://github.com/AlgebraicJulia/Decapodes.jl), +[biology](https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2021.0309), +[life sciences](https://arxiv.org/abs/2301.01445), +and [industrial engineering](https://arxiv.org/abs/2305.03820). The laboratory works closely +with Evan Patterson's research group at the [Topos Institute](https://topos.institute) to +maintain and develop the [AlgebraicJulia](https://www.algebraicjulia.org/) software ecosystem. -We are domain agnostic, working in [dynamics](https://arxiv.org/abs/2105.12282), [physics](https://github.com/AlgebraicJulia/Decapodes.jl), -[biology](https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2021.0309) and [life sciences](https://arxiv.org/abs/2301.01445), -and [industrial engineering applications](https://arxiv.org/abs/2305.03820). - -The GATAS lab works with Evan Patterson’s research group at the Topos Institute to develop and maintain the [AlgebraicJulia](https://www.algebraicjulia.org/) software ecosystem. -Scientists develop simulations by thinking about their scientific concepts, formulating mathematical models, -and then translating those models into software that answers their questions. - -Our goal is to automate as much of the modeling and simulation process using formalization directly on their scientific concepts. -Categorical logic gives us the tools to develop custom mathematical tools for each scientific discipline in a coherent framework of useful abstractions. -By implementing these abstractions in software, we can build more powerful and robust scientific software bespoke to each application, without starting from scratch in each domain. -This conceptual reuse leads to software reuse and acts as a multiplier enabling significant reductions in software engineering effort to develop state of the art scientific codes that can solve complex scientific problems. +Scientists develop simulations by translating scientific concepts into mathematical models, +and then embodying those models in software. We seek to automate this process using category +theory. Category theory is a language rich enough in abstraction to represent any scientific +concept, yet pliable enough to manipulate efficiently with a computer. The software in +[AlgebraicJulia](https://www.algebraicjulia.org/) manipulates these abstractions directly; +with it, scientists can build powerful, robust, and bespoke scientific models without +starting from scratch in each domain. diff --git a/index.qmd b/index.qmd index 590327b..a04ec66 100644 --- a/index.qmd +++ b/index.qmd @@ -2,9 +2,12 @@ title: "GATAS Lab" --- -The GATAS Lab AlgebraicJulia aims to create novel approaches -to scientific computing based on applied category theory to -solve computational science and engineering problems. - -See our "About" section for more detailed information on our lab's research goals and philosophy. - +The GATAS laboratory uses applied category to develop novel approaches to scientific +computing. We are domain-agnostic, solving problems in +[dynamics](https://arxiv.org/abs/2105.12282), +[physics](https://github.com/AlgebraicJulia/Decapodes.jl), +[biology](https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2021.0309), +[life sciences](https://arxiv.org/abs/2301.01445), +and [industrial engineering](https://arxiv.org/abs/2305.03820). The laboratory works closely +with Evan Patterson's research group at the [Topos Institute](https://topos.institute) to +maintain and develop the [AlgebraicJulia](https://www.algebraicjulia.org/) software ecosystem. diff --git a/members.qmd b/members.qmd index d6d9918..cf1601a 100644 --- a/members.qmd +++ b/members.qmd @@ -6,11 +6,12 @@ listing: - members/jamesfairbanks.qmd - members/patrickstokes.qmd - members/benbumpus.qmd - - members/wilmer.qmd + - members/wilmerleal.qmd - members/lukemorris.qmd - - members/tyler.qmd + - members/tylerhanks.qmd - members/taylorfrederick.qmd - members/georgerauta.qmd + - members/richardsamuelson.qmd type: default image-align: left image-height: 250px diff --git a/members/benbumpus.qmd b/members/benbumpus.qmd index 93e72b1..6bbba3a 100644 --- a/members/benbumpus.qmd +++ b/members/benbumpus.qmd @@ -1,8 +1,8 @@ --- title: "Benjamin Merlin Bumpus" -image: ben.png +image: images/benbumpus.png about: - template: jolla + template: trestles --- I am a faculty research scientist and the lead of algorithms subprojects within the GATAS lab. diff --git a/members/georgerauta.qmd b/members/georgerauta.qmd index 388b20e..3853bea 100644 --- a/members/georgerauta.qmd +++ b/members/georgerauta.qmd @@ -1,9 +1,9 @@ --- title: "George Rauta" -image: profile.jpg +image: images/profile.jpg about: - template: jolla + template: trestles --- -I am a research scientist who likes math. \ No newline at end of file +I am a research scientist who likes math. diff --git a/members/ben.png b/members/images/benbumpus.png similarity index 100% rename from members/ben.png rename to members/images/benbumpus.png diff --git a/members/james.png b/members/images/jamesfairbanks.png similarity index 100% rename from members/james.png rename to members/images/jamesfairbanks.png diff --git a/members/lukemorris.jpeg b/members/images/lukemorris.jpeg similarity index 100% rename from members/lukemorris.jpeg rename to members/images/lukemorris.jpeg diff --git a/members/profile.jpg 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My background is in signal processing, statistical modeling, and system identification in computational neuroscience. My research interest is applying category theory to develop structures and algorithms for robust inference -and identification of complex, high-dimensional, multi-scale, and stochastic systems. \ No newline at end of file +and identification of complex, high-dimensional, multi-scale, and stochastic systems. diff --git a/members/richardsamuelson.qmd b/members/richardsamuelson.qmd new file mode 100644 index 0000000..8455464 --- /dev/null +++ b/members/richardsamuelson.qmd @@ -0,0 +1,8 @@ +--- +title: "Richard Samuelson" +image: images/richardsamuelson.png +about: + template: trestles +--- + +I am a doctoral student researching category theory, machine learning, and convex analysis. diff --git a/members/taylorfrederick.qmd b/members/taylorfrederick.qmd index 7dca4cd..eaa15fb 100644 --- a/members/taylorfrederick.qmd +++ b/members/taylorfrederick.qmd @@ -1,9 +1,9 @@ --- title: "Taylor Frederick" -image: profile.jpg +image: images/profile.jpg about: - template: jolla + template: trestles --- -I am a research scientist who likes math. \ No newline at end of file +I am a research scientist who likes math. diff --git a/members/tyler.qmd b/members/tylerhanks.qmd similarity index 91% rename from members/tyler.qmd rename to members/tylerhanks.qmd index 2195138..aa60abe 100644 --- a/members/tyler.qmd +++ b/members/tylerhanks.qmd @@ -1,9 +1,9 @@ --- title: "Tyler Hanks" -image: TylerHanks.png +image: images/tylerhanks.png about: - template: jolla + template: trestles --- I am a PhD student in the GATAS lab working on optimization, control theory, and machine learning. diff --git a/members/wilmer.qmd b/members/wilmerleal.qmd similarity index 95% rename from members/wilmer.qmd rename to members/wilmerleal.qmd index 50bb502..bc5f195 100644 --- a/members/wilmer.qmd +++ b/members/wilmerleal.qmd @@ -1,8 +1,8 @@ --- title: "Wilmer Leal" -image: wilmer.jpg +image: images/wilmerleal.jpg about: - template: jolla + template: trestles --- I am a postdoctoral researcher at the Computer Science Department at the University of Florida, USA. From c6f23cbaec175da4a2713957cdb148516a09814e Mon Sep 17 00:00:00 2001 From: Richard Samuelson Date: Fri, 8 Dec 2023 14:10:46 -0800 Subject: [PATCH 2/4] Restored reference to About page. Changed templates: trestles -> solana. Added sections to the About page. --- about.qmd | 11 ++++++++--- index.qmd | 4 +++- members/benbumpus.qmd | 2 +- members/georgerauta.qmd | 2 +- members/jamesfairbanks.qmd | 2 +- members/lukemorris.qmd | 2 +- members/patrickstokes.qmd | 2 +- members/richardsamuelson.qmd | 11 +++++++++-- members/taylorfrederick.qmd | 2 +- members/tylerhanks.qmd | 2 +- members/wilmerleal.qmd | 2 +- research.qmd | 6 +----- 12 files changed, 29 insertions(+), 19 deletions(-) diff --git a/about.qmd b/about.qmd index 289643a..c415830 100644 --- a/about.qmd +++ b/about.qmd @@ -2,7 +2,7 @@ title: "About" image: _assets/gatas_logo.png about: - template: trestles + template: solana image-shape: rectangle links: @@ -14,6 +14,8 @@ about: href: https://www.algebraicjulia.org/ --- +# Research + The GATAS laboratory uses applied category to develop novel approaches to scientific computing. We are domain-agnostic, solving problems in [dynamics](https://arxiv.org/abs/2105.12282), @@ -24,9 +26,12 @@ and [industrial engineering](https://arxiv.org/abs/2305.03820). The laboratory w with Evan Patterson's research group at the [Topos Institute](https://topos.institute) to maintain and develop the [AlgebraicJulia](https://www.algebraicjulia.org/) software ecosystem. +# Philosophy + Scientists develop simulations by translating scientific concepts into mathematical models, -and then embodying those models in software. We seek to automate this process using category -theory. Category theory is a language rich enough in abstraction to represent any scientific +and then embodying those models in software. We seek to automate this process using +[category theory](https://en.wikipedia.org/wiki/Category_theory). +Category theory is a language rich enough in abstraction to represent any scientific concept, yet pliable enough to manipulate efficiently with a computer. The software in [AlgebraicJulia](https://www.algebraicjulia.org/) manipulates these abstractions directly; with it, scientists can build powerful, robust, and bespoke scientific models without diff --git a/index.qmd b/index.qmd index a04ec66..053fa0e 100644 --- a/index.qmd +++ b/index.qmd @@ -1,5 +1,5 @@ --- -title: "GATAS Lab" +title: "The GATAS Laboratory" --- The GATAS laboratory uses applied category to develop novel approaches to scientific @@ -11,3 +11,5 @@ computing. We are domain-agnostic, solving problems in and [industrial engineering](https://arxiv.org/abs/2305.03820). The laboratory works closely with Evan Patterson's research group at the [Topos Institute](https://topos.institute) to maintain and develop the [AlgebraicJulia](https://www.algebraicjulia.org/) software ecosystem. + +See the [About](about.qmd) page to learn more about our research goals and philosophy. diff --git a/members/benbumpus.qmd b/members/benbumpus.qmd index 6bbba3a..5ff0f7a 100644 --- a/members/benbumpus.qmd +++ b/members/benbumpus.qmd @@ -2,7 +2,7 @@ title: "Benjamin Merlin Bumpus" image: images/benbumpus.png about: - template: trestles + template: solana --- I am a faculty research scientist and the lead of algorithms subprojects within the GATAS lab. diff --git a/members/georgerauta.qmd b/members/georgerauta.qmd index 3853bea..76e3fd8 100644 --- a/members/georgerauta.qmd +++ b/members/georgerauta.qmd @@ -3,7 +3,7 @@ title: "George Rauta" image: images/profile.jpg about: - template: trestles + template: solana --- I am a research scientist who likes math. diff --git a/members/jamesfairbanks.qmd b/members/jamesfairbanks.qmd index 57ede73..9e4f5f9 100644 --- a/members/jamesfairbanks.qmd +++ b/members/jamesfairbanks.qmd @@ -2,7 +2,7 @@ title: "James Fairbanks" image: images/jamesfairbanks.png about: - template: trestles + template: solana --- Is an assistant professor in Computer and Information Science and Engineering diff --git a/members/lukemorris.qmd b/members/lukemorris.qmd index 9f520fd..79e2e8e 100644 --- a/members/lukemorris.qmd +++ b/members/lukemorris.qmd @@ -2,7 +2,7 @@ title: "Luke Morris" image: images/lukemorris.jpeg about: - template: trestles + template: solana --- I am leading development on the CombinatorialSpaces.jl and Decapodes.jl projects diff --git a/members/patrickstokes.qmd b/members/patrickstokes.qmd index 757e3b3..9c47cdd 100644 --- a/members/patrickstokes.qmd +++ b/members/patrickstokes.qmd @@ -3,7 +3,7 @@ title: "Patrick Stokes" image: images/profile.jpg about: - template: trestles + template: solana --- I am a faculty research scientist in the GATAS lab. diff --git a/members/richardsamuelson.qmd b/members/richardsamuelson.qmd index 8455464..7550d92 100644 --- a/members/richardsamuelson.qmd +++ b/members/richardsamuelson.qmd @@ -1,8 +1,15 @@ --- title: "Richard Samuelson" -image: images/richardsamuelson.png +image: images/richardsamuelson.jpg about: - template: trestles + template: solana + + links: + - icon: Github + text: GitHub + href: https://github.com/samuelsonric + - text: Website + href: https://richardsamuelson.com --- I am a doctoral student researching category theory, machine learning, and convex analysis. diff --git a/members/taylorfrederick.qmd b/members/taylorfrederick.qmd index eaa15fb..9667532 100644 --- a/members/taylorfrederick.qmd +++ b/members/taylorfrederick.qmd @@ -3,7 +3,7 @@ title: "Taylor Frederick" image: images/profile.jpg about: - template: trestles + template: solana --- I am a research scientist who likes math. diff --git a/members/tylerhanks.qmd b/members/tylerhanks.qmd index aa60abe..942ccd6 100644 --- a/members/tylerhanks.qmd +++ b/members/tylerhanks.qmd @@ -3,7 +3,7 @@ title: "Tyler Hanks" image: images/tylerhanks.png about: - template: trestles + template: solana --- I am a PhD student in the GATAS lab working on optimization, control theory, and machine learning. diff --git a/members/wilmerleal.qmd b/members/wilmerleal.qmd index bc5f195..3e77ca7 100644 --- a/members/wilmerleal.qmd +++ b/members/wilmerleal.qmd @@ -2,7 +2,7 @@ title: "Wilmer Leal" image: images/wilmerleal.jpg about: - template: trestles + template: solana --- I am a postdoctoral researcher at the Computer Science Department at the University of Florida, USA. diff --git a/research.qmd b/research.qmd index ce9921c..301d32b 100644 --- a/research.qmd +++ b/research.qmd @@ -1,9 +1,5 @@ --- title: "Current Work" -image: _assets/gatas_logo.png -about: - template: jolla - image-shape: rectangle listing: - id: recent_pubs @@ -27,7 +23,7 @@ solving a sequence of constrained optimization problems across a given time hori We present a novel Julia library that leverages our theoretical results to automate the implementation of correct-by-construction MPC problems in software. -### Recent Publications +## Recent Publications :::{#recent_pubs} ::: From 46267511e79efb28f60d295a408ea9cc32642386 Mon Sep 17 00:00:00 2001 From: Richard Samuelson Date: Fri, 8 Dec 2023 14:22:50 -0800 Subject: [PATCH 3/4] life sciences -> the life sciences --- about.qmd | 2 +- index.qmd | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/about.qmd b/about.qmd index c415830..a83de9b 100644 --- a/about.qmd +++ b/about.qmd @@ -21,7 +21,7 @@ computing. We are domain-agnostic, solving problems in [dynamics](https://arxiv.org/abs/2105.12282), [physics](https://github.com/AlgebraicJulia/Decapodes.jl), [biology](https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2021.0309), -[life sciences](https://arxiv.org/abs/2301.01445), +[the life sciences](https://arxiv.org/abs/2301.01445), and [industrial engineering](https://arxiv.org/abs/2305.03820). The laboratory works closely with Evan Patterson's research group at the [Topos Institute](https://topos.institute) to maintain and develop the [AlgebraicJulia](https://www.algebraicjulia.org/) software ecosystem. diff --git a/index.qmd b/index.qmd index 053fa0e..5257b15 100644 --- a/index.qmd +++ b/index.qmd @@ -7,7 +7,7 @@ computing. We are domain-agnostic, solving problems in [dynamics](https://arxiv.org/abs/2105.12282), [physics](https://github.com/AlgebraicJulia/Decapodes.jl), [biology](https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2021.0309), -[life sciences](https://arxiv.org/abs/2301.01445), +[the life sciences](https://arxiv.org/abs/2301.01445), and [industrial engineering](https://arxiv.org/abs/2305.03820). The laboratory works closely with Evan Patterson's research group at the [Topos Institute](https://topos.institute) to maintain and develop the [AlgebraicJulia](https://www.algebraicjulia.org/) software ecosystem. From db93e43537dd72b52d5f5a8115cb32313522e05d Mon Sep 17 00:00:00 2001 From: Richard Samuelson Date: Fri, 8 Dec 2023 14:26:41 -0800 Subject: [PATCH 4/4] Turned Research and Philosophy into subheadings in the About page. --- about.qmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/about.qmd b/about.qmd index a83de9b..a7e5fc5 100644 --- a/about.qmd +++ b/about.qmd @@ -14,7 +14,7 @@ about: href: https://www.algebraicjulia.org/ --- -# Research +## Research The GATAS laboratory uses applied category to develop novel approaches to scientific computing. We are domain-agnostic, solving problems in @@ -26,7 +26,7 @@ and [industrial engineering](https://arxiv.org/abs/2305.03820). The laboratory w with Evan Patterson's research group at the [Topos Institute](https://topos.institute) to maintain and develop the [AlgebraicJulia](https://www.algebraicjulia.org/) software ecosystem. -# Philosophy +## Philosophy Scientists develop simulations by translating scientific concepts into mathematical models, and then embodying those models in software. We seek to automate this process using