diff --git a/requirements/linux/all-requirements.txt b/requirements/linux/all-requirements.txt index fdc23ab9..9418a9dd 100644 --- a/requirements/linux/all-requirements.txt +++ b/requirements/linux/all-requirements.txt @@ -2,12 +2,12 @@ # Please do not edit it manually. aicscytoparam==0.1.12 -aicsimageio==4.14.0 +aicsimageio==4.11.0 aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -15,10 +15,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autograd==1.7.0 @@ -47,7 +47,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -57,7 +57,7 @@ einops==0.8.0 elementpath==4.5.0 escnn==1.0.11 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -78,7 +78,7 @@ greenlet==3.1.1; (platform_machine == "win32" or platform_machine == "WIN32" or gunicorn==23.0.0; platform_system != "Windows" h5py==3.12.1 huggingface-hub==0.17.3 -humanize==4.10.0 +humanize==4.11.0 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 @@ -88,8 +88,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -108,7 +108,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -120,7 +120,7 @@ multidict==6.1.0 natsort==8.4.0 networkx==3.2.1 ngff-zarr==0.8.7 -nibabel==5.2.1 +nibabel==5.3.0 ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.26.4 @@ -156,6 +156,7 @@ point-cloud-utils==0.31.0 pooch==1.8.2 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 py3nj==0.1.2 @@ -178,11 +179,11 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -203,14 +204,14 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torch-geometric==2.6.1 -torchio==0.20.0 +torchio==0.20.1 torchmetrics==1.4.2 torchserve==0.12.0 torchvision==0.15.2 @@ -229,10 +230,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/linux/docs-requirements.txt b/requirements/linux/docs-requirements.txt index 83f7fd20..857d2184 100644 --- a/requirements/linux/docs-requirements.txt +++ b/requirements/linux/docs-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alabaster==0.7.16 @@ -13,10 +13,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -46,7 +46,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -55,7 +55,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -85,8 +85,8 @@ imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 imagesize==1.4.1 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -105,7 +105,7 @@ m2r2==0.3.3.post2 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mistune==0.8.4 @@ -148,6 +148,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -166,10 +167,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -198,11 +199,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -219,10 +220,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/linux/equiv-requirements.txt b/requirements/linux/equiv-requirements.txt index 09b9c48e..f40788ed 100644 --- a/requirements/linux/equiv-requirements.txt +++ b/requirements/linux/equiv-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -12,10 +12,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autograd==1.7.0 @@ -44,7 +44,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -54,7 +54,7 @@ einops==0.8.0 elementpath==4.5.0 escnn==1.0.11 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -82,8 +82,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -102,7 +102,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -146,6 +146,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 py3nj==0.1.2 @@ -166,10 +167,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -188,11 +189,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -209,10 +210,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/linux/pdm.lock b/requirements/linux/pdm.lock index ceec7bbf..4c1d9803 100644 --- a/requirements/linux/pdm.lock +++ b/requirements/linux/pdm.lock @@ -5,7 +5,7 @@ groups = ["default", "all", "docs", "equiv", "pcloud", "s3", "spharm", "test", "torchserve"] strategy = ["inherit_metadata"] lock_version = "4.5.0" -content_hash = "sha256:4a1e5e399b9e45c14f2e2ab27f26fe2d9c0502aa8c3a950082449ca18719fb65" +content_hash = "sha256:89fdf9eda7437c368ee21f38940f85d2fe206993de4ee997b0fe14916146909d" [[metadata.targets]] requires_python = ">=3.9,<3.11" @@ -27,29 +27,28 @@ files = [ [[package]] name = "aicsimageio" -version = "4.14.0" -requires_python = ">=3.9" +version = "4.11.0" +requires_python = ">=3.8" summary = "Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python" groups = ["all", "spharm"] dependencies = [ - "PyYAML>=6.0", "dask[array]>=2021.4.1", - "fsspec<2023.9.0,>=2022.8.0", + "fsspec>=2022.8.0", "imagecodecs>=2020.5.30", "lxml<5,>=4.6", - 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alembic==1.13.3 aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -23,8 +23,8 @@ bioio-czi==1.0.1 bioio-ome-tiff==1.0.0 bioio-tifffile==1.0.0 blinker==1.8.2 -boto3==1.35.32 -botocore==1.35.32 +boto3==1.35.36 +botocore==1.35.36 cachetools==5.5.0 certifi==2024.8.30 charset-normalizer==3.3.2 @@ -41,7 +41,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -78,7 +78,7 @@ imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -96,7 +96,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -138,6 +138,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -156,14 +157,14 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==0.4.2 -s3transfer==0.10.2 +s3transfer==0.10.3 safetensors==0.4.5 scikit-image==0.22.0 scikit-learn==1.5.2 @@ -178,11 +179,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -202,7 +203,7 @@ wrapt==1.16.0 xarray==2024.7.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 +yarl==1.14.0 zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/linux/spharm-requirements.txt b/requirements/linux/spharm-requirements.txt index 0d78d054..c6dcbd49 100644 --- a/requirements/linux/spharm-requirements.txt +++ b/requirements/linux/spharm-requirements.txt @@ -2,12 +2,12 @@ # Please do not edit it manually. aicscytoparam==0.1.12 -aicsimageio==4.14.0 +aicsimageio==4.11.0 aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -15,10 +15,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -46,7 +46,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -54,7 +54,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -82,8 +82,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -101,7 +101,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -144,6 +144,7 @@ platformdirs==4.3.6 pooch==1.8.2 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -163,11 +164,11 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -186,11 +187,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -208,10 +209,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/linux/test-requirements.txt b/requirements/linux/test-requirements.txt index 7c7eb4d7..6bae7408 100644 --- a/requirements/linux/test-requirements.txt +++ b/requirements/linux/test-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -12,10 +12,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -45,7 +45,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -53,7 +53,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -81,9 +81,9 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" iniconfig==2.0.0 -itkwasm==1.0b178 +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -101,7 +101,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -144,6 +144,7 @@ platformdirs==4.3.6 pluggy==1.5.0 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -165,10 +166,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -187,12 +188,12 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 tomli==2.0.2; python_version < "3.11" -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -209,10 +210,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/linux/torchserve-requirements.txt b/requirements/linux/torchserve-requirements.txt index 4c2246a6..154e6359 100644 --- a/requirements/linux/torchserve-requirements.txt +++ b/requirements/linux/torchserve-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -12,10 +12,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -43,7 +43,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -51,7 +51,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -80,8 +80,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -99,7 +99,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -141,6 +141,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -159,10 +160,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -181,11 +182,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchserve==0.12.0 @@ -203,10 +204,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/macos/all-requirements.txt b/requirements/macos/all-requirements.txt index fdc23ab9..9418a9dd 100644 --- a/requirements/macos/all-requirements.txt +++ b/requirements/macos/all-requirements.txt @@ -2,12 +2,12 @@ # Please do not edit it manually. aicscytoparam==0.1.12 -aicsimageio==4.14.0 +aicsimageio==4.11.0 aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -15,10 +15,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autograd==1.7.0 @@ -47,7 +47,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -57,7 +57,7 @@ einops==0.8.0 elementpath==4.5.0 escnn==1.0.11 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -78,7 +78,7 @@ greenlet==3.1.1; (platform_machine == "win32" or platform_machine == "WIN32" or gunicorn==23.0.0; platform_system != "Windows" h5py==3.12.1 huggingface-hub==0.17.3 -humanize==4.10.0 +humanize==4.11.0 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 @@ -88,8 +88,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -108,7 +108,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -120,7 +120,7 @@ multidict==6.1.0 natsort==8.4.0 networkx==3.2.1 ngff-zarr==0.8.7 -nibabel==5.2.1 +nibabel==5.3.0 ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.26.4 @@ -156,6 +156,7 @@ point-cloud-utils==0.31.0 pooch==1.8.2 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 py3nj==0.1.2 @@ -178,11 +179,11 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -203,14 +204,14 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torch-geometric==2.6.1 -torchio==0.20.0 +torchio==0.20.1 torchmetrics==1.4.2 torchserve==0.12.0 torchvision==0.15.2 @@ -229,10 +230,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/macos/docs-requirements.txt b/requirements/macos/docs-requirements.txt index 83f7fd20..857d2184 100644 --- a/requirements/macos/docs-requirements.txt +++ b/requirements/macos/docs-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alabaster==0.7.16 @@ -13,10 +13,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -46,7 +46,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -55,7 +55,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -85,8 +85,8 @@ imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 imagesize==1.4.1 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -105,7 +105,7 @@ m2r2==0.3.3.post2 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mistune==0.8.4 @@ -148,6 +148,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -166,10 +167,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -198,11 +199,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -219,10 +220,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 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+astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -23,8 +23,8 @@ bioio-czi==1.0.1 bioio-ome-tiff==1.0.0 bioio-tifffile==1.0.0 blinker==1.8.2 -boto3==1.35.32 -botocore==1.35.32 +boto3==1.35.36 +botocore==1.35.36 cachetools==5.5.0 certifi==2024.8.30 charset-normalizer==3.3.2 @@ -41,7 +41,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -78,7 +78,7 @@ imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -96,7 +96,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -138,6 +138,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -156,14 +157,14 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==0.4.2 -s3transfer==0.10.2 +s3transfer==0.10.3 safetensors==0.4.5 scikit-image==0.22.0 scikit-learn==1.5.2 @@ -178,11 +179,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -202,7 +203,7 @@ wrapt==1.16.0 xarray==2024.7.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 +yarl==1.14.0 zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/macos/spharm-requirements.txt b/requirements/macos/spharm-requirements.txt index 0d78d054..c6dcbd49 100644 --- a/requirements/macos/spharm-requirements.txt +++ b/requirements/macos/spharm-requirements.txt @@ -2,12 +2,12 @@ # Please do not edit it manually. aicscytoparam==0.1.12 -aicsimageio==4.14.0 +aicsimageio==4.11.0 aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -15,10 +15,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -46,7 +46,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -54,7 +54,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -82,8 +82,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -101,7 +101,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -144,6 +144,7 @@ platformdirs==4.3.6 pooch==1.8.2 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -163,11 +164,11 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -186,11 +187,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -208,10 +209,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/macos/test-requirements.txt b/requirements/macos/test-requirements.txt index 7c7eb4d7..6bae7408 100644 --- a/requirements/macos/test-requirements.txt +++ b/requirements/macos/test-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -12,10 +12,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -45,7 +45,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -53,7 +53,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -81,9 +81,9 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" iniconfig==2.0.0 -itkwasm==1.0b178 +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -101,7 +101,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -144,6 +144,7 @@ platformdirs==4.3.6 pluggy==1.5.0 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -165,10 +166,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -187,12 +188,12 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 tomli==2.0.2; python_version < "3.11" -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -209,10 +210,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/macos/torchserve-requirements.txt b/requirements/macos/torchserve-requirements.txt index 4c2246a6..154e6359 100644 --- a/requirements/macos/torchserve-requirements.txt +++ b/requirements/macos/torchserve-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -12,10 +12,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -43,7 +43,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -51,7 +51,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -80,8 +80,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -99,7 +99,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -141,6 +141,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -159,10 +160,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -181,11 +182,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchserve==0.12.0 @@ -203,10 +204,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/windows/all-requirements.txt b/requirements/windows/all-requirements.txt index fdc23ab9..9418a9dd 100644 --- a/requirements/windows/all-requirements.txt +++ b/requirements/windows/all-requirements.txt @@ -2,12 +2,12 @@ # Please do not edit it manually. aicscytoparam==0.1.12 -aicsimageio==4.14.0 +aicsimageio==4.11.0 aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -15,10 +15,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autograd==1.7.0 @@ -47,7 +47,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -57,7 +57,7 @@ einops==0.8.0 elementpath==4.5.0 escnn==1.0.11 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -78,7 +78,7 @@ greenlet==3.1.1; (platform_machine == "win32" or platform_machine == "WIN32" or gunicorn==23.0.0; platform_system != "Windows" h5py==3.12.1 huggingface-hub==0.17.3 -humanize==4.10.0 +humanize==4.11.0 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 @@ -88,8 +88,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -108,7 +108,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -120,7 +120,7 @@ multidict==6.1.0 natsort==8.4.0 networkx==3.2.1 ngff-zarr==0.8.7 -nibabel==5.2.1 +nibabel==5.3.0 ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.26.4 @@ -156,6 +156,7 @@ point-cloud-utils==0.31.0 pooch==1.8.2 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 py3nj==0.1.2 @@ -178,11 +179,11 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -203,14 +204,14 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torch-geometric==2.6.1 -torchio==0.20.0 +torchio==0.20.1 torchmetrics==1.4.2 torchserve==0.12.0 torchvision==0.15.2 @@ -229,10 +230,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/windows/docs-requirements.txt b/requirements/windows/docs-requirements.txt index 83f7fd20..857d2184 100644 --- a/requirements/windows/docs-requirements.txt +++ b/requirements/windows/docs-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alabaster==0.7.16 @@ -13,10 +13,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -46,7 +46,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -55,7 +55,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -85,8 +85,8 @@ imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 imagesize==1.4.1 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -105,7 +105,7 @@ m2r2==0.3.3.post2 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mistune==0.8.4 @@ -148,6 +148,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -166,10 +167,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -198,11 +199,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -219,10 +220,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/windows/equiv-requirements.txt 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a/requirements/windows/requirements.txt b/requirements/windows/requirements.txt index 5c4226c6..0c80b89b 100644 --- a/requirements/windows/requirements.txt +++ b/requirements/windows/requirements.txt @@ -3,17 +3,17 @@ aicspylibczi==3.2.0 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aiosignal==1.3.1 alembic==1.13.3 aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -23,8 +23,8 @@ bioio-czi==1.0.1 bioio-ome-tiff==1.0.0 bioio-tifffile==1.0.0 blinker==1.8.2 -boto3==1.35.32 -botocore==1.35.32 +boto3==1.35.36 +botocore==1.35.36 cachetools==5.5.0 certifi==2024.8.30 charset-normalizer==3.3.2 @@ -41,7 +41,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -78,7 +78,7 @@ imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -96,7 +96,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -138,6 +138,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -156,14 +157,14 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==0.4.2 -s3transfer==0.10.2 +s3transfer==0.10.3 safetensors==0.4.5 scikit-image==0.22.0 scikit-learn==1.5.2 @@ -178,11 +179,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -202,7 +203,7 @@ wrapt==1.16.0 xarray==2024.7.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 +yarl==1.14.0 zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/windows/spharm-requirements.txt b/requirements/windows/spharm-requirements.txt index 0d78d054..c6dcbd49 100644 --- a/requirements/windows/spharm-requirements.txt +++ b/requirements/windows/spharm-requirements.txt @@ -2,12 +2,12 @@ # Please do not edit it manually. aicscytoparam==0.1.12 -aicsimageio==4.14.0 +aicsimageio==4.11.0 aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -15,10 +15,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -46,7 +46,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -54,7 +54,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -82,8 +82,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -101,7 +101,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -144,6 +144,7 @@ platformdirs==4.3.6 pooch==1.8.2 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -163,11 +164,11 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -186,11 +187,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -208,10 +209,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/windows/test-requirements.txt b/requirements/windows/test-requirements.txt index 7c7eb4d7..6bae7408 100644 --- a/requirements/windows/test-requirements.txt +++ b/requirements/windows/test-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -12,10 +12,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -45,7 +45,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -53,7 +53,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -81,9 +81,9 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" iniconfig==2.0.0 -itkwasm==1.0b178 +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -101,7 +101,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -144,6 +144,7 @@ platformdirs==4.3.6 pluggy==1.5.0 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -165,10 +166,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -187,12 +188,12 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 tomli==2.0.2; python_version < "3.11" -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchvision==0.15.2 @@ -209,10 +210,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2 diff --git a/requirements/windows/torchserve-requirements.txt b/requirements/windows/torchserve-requirements.txt index 4c2246a6..154e6359 100644 --- a/requirements/windows/torchserve-requirements.txt +++ b/requirements/windows/torchserve-requirements.txt @@ -4,7 +4,7 @@ aicspylibczi==3.2.0 aiobotocore==2.4.2 aiohappyeyeballs==2.4.3 -aiohttp==3.10.8 +aiohttp==3.10.9 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.13.3 @@ -12,10 +12,10 @@ aniso8601==9.0.1 anndata==0.10.9 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -array-api-compat==1.8 +array-api-compat==1.9 asciitree==0.3.3 astropy==6.0.1 -astropy-iers-data==0.2024.9.30.0.32.59 +astropy-iers-data==0.2024.10.7.0.32.46 async-timeout==4.0.3; python_version < "3.11" attrs==24.2.0 autopage==0.5.2 @@ -43,7 +43,7 @@ cycler==0.12.1 dask==2024.8.0 dask[array,distributed]==2024.8.0 dask[array]==2024.8.0 -databricks-sdk==0.33.0 +databricks-sdk==0.34.0 deprecated==1.2.14 distributed==2024.8.0 docker==7.1.0 @@ -51,7 +51,7 @@ edt==2.4.1 einops==0.8.0 elementpath==4.5.0 exceptiongroup==1.2.2; python_version < "3.11" -fasteners==0.19 +fasteners==0.19; sys_platform != "emscripten" filelock==3.16.1 fire==0.7.0 flask==3.0.3 @@ -80,8 +80,8 @@ imageio==2.27.0 imageio-ffmpeg==0.5.1 imageio[ffmpeg]==2.27.0 importlib-metadata==8.4.0 -importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" -itkwasm==1.0b178 +importlib-resources==6.4.5; python_version < "3.12" or sys_platform != "emscripten" +itkwasm==1.0b179 itkwasm-downsample==1.4.2 itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" @@ -99,7 +99,7 @@ lxml==4.9.4 mako==1.3.5 markdown==3.7 markdown-it-py==3.0.0 -markupsafe==2.1.5 +markupsafe==3.0.1 matplotlib==3.9.2 mdurl==0.1.2 mlflow==2.16.2 @@ -141,6 +141,7 @@ pillow==10.4.0 platformdirs==4.3.6 positional-encodings==6.0.3 prettytable==3.11.0 +propcache==0.2.0 protobuf==5.28.2 psutil==6.0.0 pyarrow==17.0.0 @@ -159,10 +160,10 @@ python-dateutil==2.9.0.post0 python-dotenv==1.0.1 pytorch-lightning==2.3.3 pytz==2024.2 -pywin32==306; sys_platform == "win32" +pywin32==307; sys_platform == "win32" pyyaml==6.0.2 requests==2.32.3 -rich==13.9.1 +rich==13.9.2 rich-argparse==1.5.2 rsa==4.9 s3fs==2023.3.0 @@ -181,11 +182,11 @@ sqlparse==0.5.1 stevedore==5.3.0 sympy==1.13.3 tblib==3.0.0 -termcolor==2.4.0 +termcolor==2.5.0 threadpoolctl==3.5.0 -tifffile==2023.2.28 +tifffile==2024.8.30 timm==1.0.9 -toolz==0.12.1 +toolz==1.0.0 torch==2.0.1 torchmetrics==1.4.2 torchserve==0.12.0 @@ -203,10 +204,10 @@ wcwidth==0.2.13 werkzeug==3.0.4 wheel==0.44.0 wrapt==1.16.0 -xarray==2024.7.0 +xarray==2023.1.0 xmlschema==3.4.2 xsdata==24.3.1 -yarl==1.13.1 -zarr==2.15.0 +yarl==1.14.0 +zarr==2.17.2 zict==3.0.0 zipp==3.20.2