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Marius

Marius is a system for training graph neural networks and embeddings for large-scale graphs on a single machine.

Marius (OSDI '21 Paper) is designed to mitigate/reduce data movement overheads using:

  • Pipelined training and IO
  • Partition caching and buffer-aware data orderings

We scale graph neural network training (preprint) through:

  • Optimized datastructures for neighbor sampling and GNN aggregation
  • Out-of-core GNN training

Build and Install

Requirements

  • CUDA >= 10.1
  • CuDNN >= 7
  • pytorch >= 1.8
  • python >= 3.6
  • GCC >= 7 (On Linux) or Clang 12.0 (On MacOS)
  • cmake >= 3.12
  • make >= 3.8

Pip Installation

git clone https://github.com/marius-team/marius.git
pip3 install .

The Python API can be accessed with import marius

The following commands will be installed:

  • marius_train: Train models using configuration files and the command line
  • marius_eval: Command line model evaluation
  • marius_preprocess: Built-in dataset downloading and preprocessing
  • marius_predict: Batch inference tool for link prediction or node classification

Command Line Training

First make sure marius is installed with pip3 install .

Preprocess dataset the FB15K_237 dataset with marius_preprocess --dataset fb15k_237 --output_dir datasets/fb15k_237_example/

Train example configuration file (assuming we are in the repo root directory) marius_train examples/fb15k_237.yaml

After running this configuration, the MRR output by the system should be about .25 after 10 epochs.

Perform batch inference on the test set with marius_predict --config examples/fb15k_237.yaml --metrics mrr --save_scores --save_ranks

See the full example for details.

Python API

See the documentation for Python API usage and examples.

Citing Marius

Marius (out-of-core graph embeddings)

@inproceedings {273733,
    author = {Jason Mohoney and Roger Waleffe and Henry Xu and Theodoros Rekatsinas and Shivaram Venkataraman},
    title = {Marius: Learning Massive Graph Embeddings on a Single Machine},
    booktitle = {15th {USENIX} Symposium on Operating Systems Design and Implementation ({OSDI} 21)},
    year = {2021},
    isbn = {978-1-939133-22-9},
    pages = {533--549},
    url = {https://www.usenix.org/conference/osdi21/presentation/mohoney},
    publisher = {{USENIX} Association},
    month = jul,
}

Marius++ (out-of-core GNN training)

@misc{waleffe2022marius,
  doi = {10.48550/ARXIV.2202.02365},
  url = {https://arxiv.org/abs/2202.02365},
  author = {Waleffe, Roger and Mohoney, Jason and Rekatsinas, Theodoros and Venkataraman, Shivaram},
  keywords = {Machine Learning (cs.LG), Databases (cs.DB), FOS: Computer and information sciences, FOS: Computer and information sciences},
  title = {Marius++: Large-Scale Training of Graph Neural Networks on a Single Machine},
  publisher = {arXiv},
  year = {2022},