Dockerfile

# Need a Pathway-tools installer in the same folder.
# Use it with the command mpwt -f folder
FROM phusion/baseimage:latest
MAINTAINER "Belcour A."
LABEL Version="0.2"
LABEL Description="Multiprocessing Pathway-Tools 22.0 in Docker container"

# Update repositories & install packages.
# Create file needed by Pathway-Tools to find Blast binaries.
RUN apt-get -y update && \
    apt-get install -y \
    csh \
    ncbi-blast+ \
    libxm4 \
    iputils-ping \
    gnome-terminal;\
    echo "[ncbi]\nData=/usr/bin/data" > ~/.ncbirc

# Copy the Pathway-Tools installer into the docker.
COPY pathway-tools-22.0-linux-64-tier1-install /tmp/

# Install silently Pathway-Tools in /programs/pathway-tools and clean folder.
RUN mkdir programs;\
    chmod u+x /tmp/pathway-tools-22.0-linux-64-tier1-install;\
    ./tmp/pathway-tools-22.0-linux-64-tier1-install --InstallDir /programs/pathway-tools --PTOOLS_LOCAL_PATH /root --InstallDesktopShortcuts 0 --mode unattended;\
    echo 'export PATH="$PATH:/programs/pathway-tools:"' >> ~/.bashrc;\
    rm /tmp/pathway-tools-22.0-linux-64-tier1-install;\
    apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

# Install multiprocessing script and its dependencies.
RUN curl https://bootstrap.pypa.io/get-pip.py | python3;\
    pip install mpwt