added t1w preprocess pipeline #101
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| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: Build release | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| workflow_dispatch: # Allow manual triggering by a user with write access to this repo | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Removed unnecessary tools to free space | |
| run: | | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Get release tag | |
| run: | | |
| git fetch --prune --unshallow | |
| echo "RELEASE=`echo $(git describe --tags --abbrev=0)`" >> $GITHUB_ENV | |
| - name: Unset header | |
| # checkout@v2 adds a header that makes branch protection report errors | |
| # because the Github action bot is not a collaborator on the repo | |
| run: git config --local --unset http.https://github.com/.extraheader | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.11' | |
| - name: Update build tools | |
| run: python -m pip install --upgrade pip | |
| - name: Install dependencies | |
| run: pip install -r requirements.txt | |
| - uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} # - must be in GitHub Secrets! | |
| - name: Check for tagged release | |
| id: deployable | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| run: echo "PUSH='--push'" | |
| - name: Build and push container images | |
| env: | |
| PUSH: "${{ steps.deployable.outputs.PUSH }}" | |
| run: > | |
| pipeline2app make xnat ./specs/australian-imaging-service/mri/human/neuro/t1w/preprocess.yaml | |
| --registry ghcr.io --check-registry --clean-up --loglevel info | |
| --resources-dir ./resources --spec-root ./specs --source-package . $PUSH | |
| # --release pipelines-metapackage $RELEASE --tag-latest |