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Consider option to add spike-in genome for calculation of bisulfite conversion rate #185

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alexg9010 opened this issue Aug 11, 2022 · 0 comments

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alexg9010 commented Aug 11, 2022

I guess there are multiple options how this could be achieved:

add extra spike-in genome fasta file and perform extra round of mapping
add spike-in genome sequences to main genome file and filter out after mapping which reads mapped to spike-in chromosomes
tell users to create another settings file and perform another run

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