testsuite.yml

name: Test suite

on:
  workflow_dispatch:
  pull_request:
    branches: ['develop']
    paths:
      - '.github/workflows/testsuite.yml'
      - 'superdsm/**'
      - 'examples/**'
      - 'superdsm.yml'
      - 'tests/**'
      - 'requirements.txt'

jobs:

  run_testsuite:
    name: Test suite
    runs-on: gpuagrohr-01
    container:
      image: ubuntu:22.04
    defaults:
      run:
        shell: bash -el {0}

    steps:

      - name: Checkout
        uses: actions/checkout@v2

      - name: Clear cache  # otherwise corrupted packages can be reported sometimes
        run: rm -rf /github/home/conda_pkgs_dir

      - name: Setup Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniconda-version: 'latest'
          channels: conda-forge, bioconda, defaults
          auto-update-conda: true
          auto-activate-base: false
          activate-environment: superdsm
          environment-file: superdsm.yml

      - name: Export the environment
        run: 'conda env export | grep -v "^prefix: " > superdsm.yml'

      - name: Save the environment as an artifact
        uses: actions/upload-artifact@v4
        with:
          name: superdsm.yml
          path: superdsm.yml

      - name: Run SuperDSM
        run: python -m "unittest"