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@BilkentCompGen

Alkan Lab for Bioinformatics and Computational Genomics

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  1. tardis tardis Public

    Toolkit for automated and rapid discovery of structural variants

    C 21 6

  2. hercules hercules Public

    Profile HMM-based hybrid error correction algorithm for long reads

    C++ 20 4

  3. mrfast mrfast Public

    micro-read Fast Alignment Search Tool

    C 19 4

  4. GateKeeper GateKeeper Public

    GateKeeper: Fast Alignment Filter for DNA Short Read Mapping

    VHDL 18 9

  5. valor valor Public

    variation discovery using long range information in linked-reads

    C 15 2

  6. mrcanavar mrcanavar Public

    micro-read Copy Number Variant Regions finder

    C 10 2

Repositories

Showing 10 of 21 repositories
  • gencore Public

    GenCore utilizes the innovative Locally Consistent Parsing (LCP) algorithm for precise genomic comparisons, supporting .fastq, .bam, and .fasta files. Implemented in C++ for high performance on large datasets

    BilkentCompGen/gencore’s past year of commit activity
    C++ 0 BSD-3-Clause 0 0 0 Updated Dec 6, 2024
  • lcptools Public

    The string class contains algorithm that runs lcp on given string and alphabet encoding

    BilkentCompGen/lcptools’s past year of commit activity
    C++ 0 BSD-3-Clause 0 0 0 Updated Dec 6, 2024
  • BilkentCompGen.github.io Public

    Alkan Lab website

    BilkentCompGen/BilkentCompGen.github.io’s past year of commit activity
    SCSS 3 7 0 0 Updated Dec 3, 2024
  • GateKeeper-GPU Public

    Pre-Alignment Filtering for Short Read Mapping in GPU

    BilkentCompGen/GateKeeper-GPU’s past year of commit activity
    C 3 1 0 0 Updated Jun 27, 2024
  • saber Public

    Pattern matching tool to detect block rearrangement events in genomic sequences

    BilkentCompGen/saber’s past year of commit activity
    C++ 1 0 0 0 Updated Feb 14, 2024
  • Linden Public
    BilkentCompGen/Linden’s past year of commit activity
    C++ 0 1 0 0 Updated Oct 15, 2023
  • tardis Public

    Toolkit for automated and rapid discovery of structural variants

    BilkentCompGen/tardis’s past year of commit activity
    C 21 BSD-2-Clause 6 3 0 Updated Aug 24, 2023
  • brifin Public
    BilkentCompGen/brifin’s past year of commit activity
    Python 1 BSD-2-Clause 0 0 0 Updated Jan 2, 2023
  • valor Public

    variation discovery using long range information in linked-reads

    BilkentCompGen/valor’s past year of commit activity
    C 15 BSD-3-Clause 2 5 0 Updated Oct 5, 2021
  • mrcanavar Public

    micro-read Copy Number Variant Regions finder

    BilkentCompGen/mrcanavar’s past year of commit activity
    C 10 BSD-3-Clause 2 0 0 Updated Feb 24, 2021
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