Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

说明文档需要改进啊啊啊啊啊!!!!!!! #51

Open
wangshun1121 opened this issue Nov 26, 2023 · 1 comment
Open
Labels
documentation Improvements or additions to documentation installation

Comments

@wangshun1121
Copy link

Bio- OS的部署文档,讲到Cromwell安装 那里,提到了两种安装方式。

第一种通过helm安装,之后测试示例的CramToBam流程 就无法通过,该流程需要cromwell调用docker,但Cromwell的容器中没有docker。

那好,然后更换第二种jar包安装。但文档中只给出了jar包的配置文件,另外一个非常重要的东西,bioos-storage-pvc需要另外手工配置,然而文档里没有说明!希望文档中,按我下面回复的意思,把这段补充完整吧!

@wangshun1121
Copy link
Author

这里说一下手动部署 bioos-storage-pvc 的过程,亲测可行。

首先,撰写 bioos-storage-pvc.yaml 内容如下:

apiVersion: v1
kind: PersistentVolumeClaim
metadata:
  namespace: bioos
  name: bioos-storage-pvc
spec:
  storageClassName: nfs-csi
  accessModes:
    - ReadWriteMany
  resources:
    requests:
      storage: 50Gi

然后,用下面的命令,启动pvc:

kubectl apply -f bioos-storage-pvc.yaml

等到pvc启动成功,用下面的代码看看 pvc:

 kubectl get pvc -n bioos
image

之后,找到NAS上该pvc新生成的路径,将其挂载到工作节点上:

mkdir -p /nfs/bioos-storage
mount -t nfs -o rw,soft ${NAS_IP}:${NFS_PATH}/bioos-storage/pvc-****** /nfs/bioos-storage

工作机挂载点 /nfs/bioos-storage对应的Cromwell配置文件application.conf中的文件存储路径。

之后,再依据后面的说明,依次安装cromwell的jar包盒bio-os。

@ealyn ealyn added documentation Improvements or additions to documentation installation labels Dec 1, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
documentation Improvements or additions to documentation installation
Projects
None yet
Development

No branches or pull requests

2 participants