diff --git a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld new file mode 100644 index 0000000..4801a1b --- /dev/null +++ b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld @@ -0,0 +1,548 @@ +{ + "@context": { + "schema": "http://schema.org/", + "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", + "rdfs": "http://www.w3.org/2000/01/rdf-schema#", + "bioschemastypesdrafts": "https://discovery.biothings.io/view/bioschemastypesdrafts/" + }, + "@graph": [ + { + "@id": "bioschemastypesdrafts:BioSample", + "@type": "rdfs:Class", + "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Ginger Tsueng, Rita Monteiro and Joana Pauperio. Note, the property `funding` was originally added as `grant`, but was changed to for consistency with schema.org.", + "rdfs:label": "BioSample", + "schema:additionalType":"https://bioschemas.org/types#nav-draft", + "rdfs:subClassOf": { + "@id": "bioschemastypesdrafts:Sample" + }, + "schema:schemaVersion": [ + "https://schema.org/docs/releases.html#v23.0" + ] + }, + { + "@id": "bioschemastypesdrafts:dateCollected", + "@type": "rdf:Property", + "rdfs:comment": "The date on which the sample was collected.", + "rdfs:label": "dateCollected", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Date" + }, + { + "@id": "schema:DateTime" + } + ] + }, + { + "@id": "bioschemastypesdrafts:datePublished", + "@type": "rdf:Property", + "rdfs:comment": "The date when the record of the sample will be made publicly available.", + "rdfs:label": "datePublished", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Date" + }, + { + "@id": "schema:DateTime" + } + ] + }, + { + "@id": "bioschemastypesdrafts:submitter", + "@type": "rdf:Property", + "rdfs:comment": "The person or organization that registers the sample. ", + "rdfs:label": "submitter", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Person" + }, + { + "@id": "schema:Organization" + } + ] + }, + { + "@id": "bioschemastypesdrafts:maintainer", + "@type": "rdf:Property", + "rdfs:comment": "The Person or Organization who is responsible for the Sample.", + "rdfs:label": "maintainer", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Person" + }, + { + "@id": "schema:Organization" + } + ] + }, + { + "@id": "bioschemastypesdrafts:contributor", + "@type": "rdf:Property", + "rdfs:comment": "Person or organization that contributes to the work.", + "rdfs:label": "contributor", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Person" + }, + { + "@id": "schema:Organization" + } + ] + }, + { + "@id": "bioschemastypesdrafts:longitude", + "@type": "rdf:Property", + "rdfs:comment": "The longitude from which the sample was originally collected. ", + "rdfs:label": "longitude", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:GeoCoordinates" + } + ] + }, + { + "@id": "bioschemastypesdrafts:elevation", + "@type": "rdf:Property", + "rdfs:comment": "The altitude from which the sample was originally collected. ", + "rdfs:label": "elevation", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:GeoCoordinates" + } + ] + }, + { + "@id": "bioschemastypesdrafts:latitude", + "@type": "rdf:Property", + "rdfs:comment": "The latitude from which the sample was originally collected. ", + "rdfs:label": "latitude", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:GeoCoordinates" + } + ] + }, + { + "@id": "bioschemastypesdrafts:depth", + "@type": "rdf:Property", + "rdfs:comment": "The extent downward or inward from the surface from which the sample was originally collected. ", + "rdfs:label": "depth", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:QuantitativeValue" + } + ] + }, + { + "@id": "bioschemastypesdrafts:locationOfOrigin", + "@type": "rdf:Property", + "rdfs:comment": "The location from which the sample was originally collected.", + "rdfs:label": "locationOfOrigin", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:GeoCoordinates" + } + ] + }, + { + "@id": "bioschemastypesdrafts:dateModified", + "@type": "rdf:Property", + "rdfs:comment": "Date sample record was last updated.", + "rdfs:label": "dateModified", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Date" + }, + { + "@id": "schema:DateTime" + } + ] + }, + { + "@id": "bioschemastypesdrafts:keywords", + "@type": "rdf:Property", + "rdfs:comment": "Terms that capture the main subjects e.g. cancer, plant biology.", + "rdfs:label": "keywords", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:alternateIdentifier", + "@type": "rdf:Property", + "rdfs:comment": "An additional identifier for the same instance of the resource. ", + "rdfs:label": "alternateIdentifier", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:contactPoint", + "@type": "rdf:Property", + "rdfs:comment": "Person or organization that can be contacted for more information or support. ", + "rdfs:label": "contactPoint", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Person" + }, + { + "@id": "schema:Organization" + } + ] + }, + { + "@id": "bioschemastypesdrafts:environmentalSystem", + "@type": "rdf:Property", + "rdfs:comment": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected.", + "rdfs:label": "environmentalSystem", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:sampleQuantity", + "@type": "rdf:Property", + "rdfs:comment": "A numeric value for a measurement of the size of a sample.", + "rdfs:label": "sampleQuantity", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:QuantitativeValue" + } + ] + }, + { + "@id": "bioschemastypesdrafts:processingDate", + "@type": "rdf:Property", + "rdfs:comment": "The date the sample was processed or used in a method.", + "rdfs:label": "processingDate", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Date" + }, + { + "@id": "schema:DateTime" + } + ] + }, + { + "@id": "bioschemastypesdrafts:sampleState", + "@type": "rdf:Property", + "rdfs:comment": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid.", + "rdfs:label": "sampleState", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:sampleType", + "@type": "rdf:Property", + "rdfs:comment": "Indicate the type of sample", + "rdfs:label": "sampleType", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + }, + { + "@id": "schema:URL" + } + ] + }, + { + "@id": "bioschemastypesdrafts:collectionMethod", + "@type": "rdf:Property", + "rdfs:comment": "Provide information about the conditions and methods of acquisition of samples. ", + "rdfs:label": "collectionMethod", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:sampleStorageTemperature", + "@type": "rdf:Property", + "rdfs:comment": "Storage condition of the sample.", + "rdfs:label": "sampleStorageTemperature", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:QualitativeValue" + } + ] + }, + { + "@id": "bioschemastypesdrafts:sampleProcess", + "@type": "rdf:Property", + "rdfs:comment": "The processing technique that was applied to the sample, methods used to prepare the samples.", + "rdfs:label": "sampleProcess", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:experimentalPurpose", + "@type": "rdf:Property", + "rdfs:comment": "Describe the planned or executed experimental procedures involving the samples.", + "rdfs:label": "experimentalPurpose", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:instrument", + "@type": "rdf:Property", + "rdfs:comment": "Provide description of instruments and devices used.", + "rdfs:label": "instrument", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + }, + { + "@id": "schema:URL" + } + ] + }, + { + "@id": "bioschemastypesdrafts:funding", + "@type": "rdf:Property", + "rdfs:comment": "Provide funding information.", + "rdfs:label": "funding", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Grant" + } + ] + }, + { + "@id": "bioschemastypesdrafts:project", + "@type": "rdf:Property", + "rdfs:comment": "Information on the project.", + "rdfs:label": "project", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:ResearchProject" + } + ] + }, + { + "@id": "bioschemastypesdrafts:relatedItem", + "@type": "rdf:Property", + "rdfs:comment": "Describe related items including other resources related to the samples.", + "rdfs:label": "relatedItem", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Dataset" + }, + { + "@id": "schema:ImageObject" + }, + { + "@id": "schema:CreativeWork" + }, + { + "@id": "schema:Text" + }, + { + "@id": "schema:URL" + } + ] + }, + { + "@id": "bioschemastypesdrafts:isDescribedBy", + "@type": "rdf:Property", + "rdfs:comment": "List publications where the sample is mentioned or described.", + "rdfs:label": "isDescribedBy", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Article" + } + ] + }, + { + "@id": "bioschemastypesdrafts:studyTitle", + "@type": "rdf:Property", + "rdfs:comment": "Title of the study the samples belong to", + "rdfs:label": "studyTitle", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:studyID", + "@type": "rdf:Property", + "rdfs:comment": "Indicate the study ID.", + "rdfs:label": "studyID", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + }, + { + "@id": "schema:URL" + } + ] + }, + { + "@id": "bioschemastypesdrafts:sampleAvailability", + "@type": "rdf:Property", + "rdfs:comment": "Indicate whether this resource is available for reuse.", + "rdfs:label": "sampleAvailability", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Boolean" + } + ] + }, + { + "@id": "bioschemastypesdrafts:accessConditions", + "@type": "rdf:Property", + "rdfs:comment": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted.", + "rdfs:label": "accessConditions", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:ethics", + "@type": "rdf:Property", + "rdfs:comment": "Indicate which ethics policies are associated with the sample.", + "rdfs:label": "ethics", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:scientificName", + "@type": "rdf:Property", + "rdfs:comment": "The full scientific name (order, family, subfamily, genus,specificEpithet).", + "rdfs:label": "scientificName", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:anatomicalSystem", + "@type": "rdf:Property", + "rdfs:comment": "An anatomical system is a group of anatomical structures that work together to perform a certain task. Can include circulatory, digestive, endocrine, immune and other systems", + "rdfs:label": "anatomicalSystem", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:AnatomicalSystem" + } + ] + }, + { + "@id": "bioschemastypesdrafts:organ", + "@type": "rdf:Property", + "rdfs:comment": "Anatomical structure that performs a specific function or group of function.", + "rdfs:label": "organ", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:AnatomicalStructure" + } + ] + }, + { + "@id": "bioschemastypesdrafts:tissue", + "@type": "rdf:Property", + "rdfs:comment": "Indicate the tissue from which the sample was collected.", + "rdfs:label": "tissue", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:AnatomicalStructure" + } + ] + }, + { + "@id": "bioschemastypesdrafts:sex", + "@type": "rdf:Property", + "rdfs:comment": "The biological sex of the individual from which the sample was obtained.", + "rdfs:label": "sex", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:developmentalStage", + "@type": "rdf:Property", + "rdfs:comment": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.", + "rdfs:label": "developmentalStage", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "bioschemastypesdrafts:relationshipType", + "@type": "rdf:Property", + "rdfs:comment": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont.", + "rdfs:label": "relationshipType", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + } + ] +} diff --git a/BioSample/jsonld/type/gbhBioSamples.jsonld b/BioSample/jsonld/type/gbhBioSamples.jsonld deleted file mode 100644 index cf56206..0000000 --- a/BioSample/jsonld/type/gbhBioSamples.jsonld +++ /dev/null @@ -1,733 +0,0 @@ -{ - "@context": { - "schema": "http://schema.org/", - "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", - "rdfs": "http://www.w3.org/2000/01/rdf-schema#", - "gbhBioSample": "https://discovery.biothings.io/view/gbhBioSample/", - "bioschemas": "https://discovery.biothings.io/view/bioschemas/" - }, - "@graph": [ - { - "@id": "gbhBioSample:GbhBioSample", - "@type": "rdfs:Class", - "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Rita Monteiro and Joana Pauperio.", - "rdfs:label": "GbhBioSample", - "rdfs:subClassOf": { - "@id": "bioschemastypes:BioSample" - }, - "$validation": { - "$schema": "http://json-schema.org/draft-07/schema#", - "type": "object", - "properties": { - "dateCollected": { - "description": "The date on which the sample was collected." - }, - "datePublished": { - "description": "The date when the record of the sample will be made publicly available." - }, - "Submitter": { - "description": "The person or organization that registers the sample. " - }, - "maintainer": { - "description": "The Person or Organization who is responsible for the Sample." - }, - "contributor": { - "description": "Person or organization that contributes to the work." - }, - "longitude": { - "description": "The longitude from which the sample was originally collected. " - }, - "elevation": { - "description": "The altitude from which the sample was originally collected. " - }, - "latitude": { - "description": "The latitude from which the sample was originally collected. " - }, - "depth": { - "description": "The extent downward or inward from the surface from which the sample was originally collected. " - }, - "locationOfOrigin": { - "description": "The location from which the sample was originally collected." - }, - "dateModified": { - "description": "Date sample record was last updated." - }, - "keywords": { - "description": "Terms that capture the main subjects e.g. cancer, plant biology." - }, - "alternateIdentifier": { - "description": "An additional identifier for the same instance of the resource. " - }, - "contactPoint": { - "description": "Person or organization that can be contacted for more information or support. " - }, - "environmentalSystem": { - "description": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected." - }, - "sampleQuantity": { - "description": "A numeric value for a measurement of the size of a sample." - }, - "processingDate": { - "description": "The date the sample was processed or used in a method." - }, - "sampleState": { - "description": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid." - }, - "sampleType": { - "description": "Indicate the type of sample, e.g.fibroblasts, oocyte." - }, - "collectionMethod": { - "description": "Provide information about the conditions and methods of acquisition of samples." - }, - "sampleStorageTemperature": { - "description": "Storage condition of the sample" - }, - "sampleProcess": { - "description": "The processing technique that was applied to the sample, methods used to prepare the samples." - }, - "experimentalPurpose": { - "description": "Describe the planned or executed experimental procedures involving the samples." - }, - "instrument": { - "description": "Provide description of instruments and devices used." - }, - "grant": { - "description": "Provide grant information." - }, - "project": { - "description": "Information on the project." - }, - "relatedItem": { - "description": "Describe related items including other resources related to the samples." - }, - "isDescribedBy": { - "description": "List publications where the sample is mentioned or described." - }, - "studyTitle": { - "description": "Title of the study the samples belong to" - }, - "studyID": { - "description": "Indicate the study ID." - }, - "sampleAvailability": { - "description": "Indicate whether this resource is available for reuse." - }, - "accessConditions": { - "description": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted." - }, - "ethics": { - "description": "Indicate which ethics policies are associated with the sample." - }, - "scientificName": { - "description": "The full scientific name (order, family, subfamily, genus,specificEpithet)." - }, - "anatamoicalSystem": { - "description": "Indicate the anatomical system from which the sample is collect, e.g. circulatory, digestive, endocrine, immune and other systems." - }, - "organ": { - "description": "Indicate the organ the sample was collected from." - }, - "tissue": { - "description": "Indicate the tissue from which the sample was collected." - }, - "sex": { - "description": "The biological sex from which the sample was obtained." - }, - "developmentalStage": { - "description": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created." - }, - "relationshipType": { - "description": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont." - }, - "collector": { - "description": "The Person or Organization who collected the Sample. " - }, - "dateCreated": { - "description": "The date on which the CreativeWork was created or the item was added to a DataFeed. " - }, - "isControl": { - "description": "Indicates whether the sample is being used as a normal control, may be in combination with another sample." - }, - "itemLocation": { - "description": "Current location of the item." - }, - "locationCreated": { - "description": "The place where a sample underwent processing or creation, distinct from its original location." - }, - "associatedDisease": { - "description": "Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue." - }, - "biologicalRole": { - "description": "A role played by the BioChemEntity within a biological context." - }, - "isInvolvedInBiologicalProcess": { - "description": "Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence." - }, - "isLocatedInSubcellularLocation": { - "description": "Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence." - }, - "taxonomicRange": { - "description": "The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity." - }, - "alternateName": { - "description": "An alias for the item." - }, - "description": { - "description": "A description of the item." - }, - "identifier": { - "description": "The identifier property represents any kind of identifier for any kind of [[Thing]], such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See [background notes](/docs/datamodel.html#identifierBg) for more details.\n " - }, - "name": {}, - "sameAs": {}, - "url": { - "description": "URL of the item." - } - }, - "required": [], - "recommended": [], - "optional": [] - }, - "schemaVersion": [ - "https://schema.org/docs/releases.html#v23.0" - ] - }, - { - "@id": "gbhBioSample:dateCollected", - "@type": "rdf:Property", - "rdfs:comment": "The date on which the sample was collected.", - "rdfs:label": "dateCollected", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Date" - }, - { - "@id": "schema:DateTime" - } - ] - }, - { - "@id": "gbhBioSample:datePublished", - "@type": "rdf:Property", - "rdfs:comment": "The date when the record of the sample will be made publicly available.", - "rdfs:label": "datePublished", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Date" - }, - { - "@id": "schema:DateTime" - } - ] - }, - { - "@id": "gbhBioSample:Submitter", - "@type": "rdf:Property", - "rdfs:comment": "The person or organization that registers the sample. ", - "rdfs:label": "Submitter", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Person" - }, - { - "@id": "schema:Organization" - }, - { - "@id": "" - } - ] - }, - { - "@id": "gbhBioSample:maintainer", - "@type": "rdf:Property", - "rdfs:comment": "The Person or Organization who is responsible for the Sample.", - "rdfs:label": "maintainer", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Person" - }, - { - "@id": "schema:Organization" - } - ] - }, - { - "@id": "gbhBioSample:contributor", - "@type": "rdf:Property", - "rdfs:comment": "Person or organization that contributes to the work.", - "rdfs:label": "contributor", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Person" - }, - { - "@id": "schema:Organization" - } - ] - }, - { - "@id": "gbhBioSample:longitude", - "@type": "rdf:Property", - "rdfs:comment": "The longitude from which the sample was originally collected. ", - "rdfs:label": "longitude", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:GeoCoordinates" - } - ] - }, - { - "@id": "gbhBioSample:elevation", - "@type": "rdf:Property", - "rdfs:comment": "The altitude from which the sample was originally collected. ", - "rdfs:label": "elevation", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:GeoCoordinates" - } - ] - }, - { - "@id": "gbhBioSample:latitude", - "@type": "rdf:Property", - "rdfs:comment": "The latitude from which the sample was originally collected. ", - "rdfs:label": "latitude", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:GeoCoordinates" - } - ] - }, - { - "@id": "gbhBioSample:depth", - "@type": "rdf:Property", - "rdfs:comment": "The extent downward or inward from the surface from which the sample was originally collected. ", - "rdfs:label": "depth", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:QuantitativeValue" - } - ] - }, - { - "@id": "gbhBioSample:locationOfOrigin", - "@type": "rdf:Property", - "rdfs:comment": "The location from which the sample was originally collected.", - "rdfs:label": "locationOfOrigin", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:GeoCoordinates" - } - ] - }, - { - "@id": "gbhBioSample:dateModified", - "@type": "rdf:Property", - "rdfs:comment": "Date sample record was last updated.", - "rdfs:label": "dateModified", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Date" - }, - { - "@id": "schema:DateTime" - } - ] - }, - { - "@id": "gbhBioSample:keywords", - "@type": "rdf:Property", - "rdfs:comment": "Terms that capture the main subjects e.g. cancer, plant biology.", - "rdfs:label": "keywords", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:alternateIdentifier", - "@type": "rdf:Property", - "rdfs:comment": "An additional identifier for the same instance of the resource. ", - "rdfs:label": "alternateIdentifier", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:contactPoint", - "@type": "rdf:Property", - "rdfs:comment": "Person or organization that can be contacted for more information or support. ", - "rdfs:label": "contactPoint", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Person" - }, - { - "@id": "schema:Organization" - } - ] - }, - { - "@id": "gbhBioSample:environmentalSystem", - "@type": "rdf:Property", - "rdfs:comment": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected.", - "rdfs:label": "environmentalSystem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:sampleQuantity", - "@type": "rdf:Property", - "rdfs:comment": "A numeric value for a measurement of the size of a sample.", - "rdfs:label": "sampleQuantity", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:QuantitativeValue" - } - ] - }, - { - "@id": "gbhBioSample:processingDate", - "@type": "rdf:Property", - "rdfs:comment": "The date the sample was processed or used in a method.", - "rdfs:label": "processingDate", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Date" - }, - { - "@id": "schema:DateTime" - } - ] - }, - { - "@id": "gbhBioSample:sampleState", - "@type": "rdf:Property", - "rdfs:comment": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid.", - "rdfs:label": "sampleState", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:sampleType", - "@type": "rdf:Property", - "rdfs:comment": "Indicate the type of sample", - "rdfs:label": "sampleType", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - }, - { - "@id": "schema:URL" - } - ] - }, - { - "@id": "gbhBioSample:collectionMethod", - "@type": "rdf:Property", - "rdfs:comment": "Provide information about the conditions and methods of acquisition of samples. ", - "rdfs:label": "collectionMethod", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:sampleStorageTemperature", - "@type": "rdf:Property", - "rdfs:comment": "Storage condition of the sample.", - "rdfs:label": "sampleStorageTemperature", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:QualitativeValue" - }, - { - "@id": "" - } - ] - }, - { - "@id": "gbhBioSample:sampleProcess", - "@type": "rdf:Property", - "rdfs:comment": "The processing technique that was applied to the sample, methods used to prepare the samples.", - "rdfs:label": "sampleProcess", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:experimentalPurpose", - "@type": "rdf:Property", - "rdfs:comment": "Describe the planned or executed experimental procedures involving the samples.", - "rdfs:label": "experimentalPurpose", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:instrument", - "@type": "rdf:Property", - "rdfs:comment": "Provide description of instruments and devices used.", - "rdfs:label": "instrument", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - }, - { - "@id": "schema:URL" - } - ] - }, - { - "@id": "gbhBioSample:grant", - "@type": "rdf:Property", - "rdfs:comment": "Provide grant information.", - "rdfs:label": "grant", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Grant" - }, - { - "@id": "" - } - ] - }, - { - "@id": "gbhBioSample:project", - "@type": "rdf:Property", - "rdfs:comment": "Information on the project.", - "rdfs:label": "project", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:ResearchProject" - } - ] - }, - { - "@id": "gbhBioSample:relatedItem", - "@type": "rdf:Property", - "rdfs:comment": "Describe related items including other resources related to the samples.", - "rdfs:label": "relatedItem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Dataset" - }, - { - "@id": "schema:ImageObject" - }, - { - "@id": "schema:CreativeWork" - }, - { - "@id": "schema:Text" - }, - { - "@id": "schema:URL" - } - ] - }, - { - "@id": "gbhBioSample:isDescribedBy", - "@type": "rdf:Property", - "rdfs:comment": "List publications where the sample is mentioned or described.", - "rdfs:label": "isDescribedBy", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Article" - } - ] - }, - { - "@id": "gbhBioSample:studyTitle", - "@type": "rdf:Property", - "rdfs:comment": "Title of the study the samples belong to", - "rdfs:label": "studyTitle", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:studyID", - "@type": "rdf:Property", - "rdfs:comment": "Indicate the study ID.", - "rdfs:label": "studyID", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - }, - { - "@id": "schema:URL" - } - ] - }, - { - "@id": "gbhBioSample:sampleAvailability", - "@type": "rdf:Property", - "rdfs:comment": "Indicate whether this resource is available for reuse.", - "rdfs:label": "sampleAvailability", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Boolean" - } - ] - }, - { - "@id": "gbhBioSample:accessConditions", - "@type": "rdf:Property", - "rdfs:comment": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted.", - "rdfs:label": "accessConditions", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:ethics", - "@type": "rdf:Property", - "rdfs:comment": "Indicate which ethics policies are associated with the sample.", - "rdfs:label": "ethics", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - }, - { - "@id": "" - } - ] - }, - { - "@id": "gbhBioSample:scientificName", - "@type": "rdf:Property", - "rdfs:comment": "The full scientific name (order, family, subfamily, genus,specificEpithet).", - "rdfs:label": "scientificName", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:anatamoicalSystem", - "@type": "rdf:Property", - "rdfs:comment": "An anatomical system is a group of anatomical structures that work together to perform a certain task. Can include circulatory, digestive, endocrine, immune and other systems", - "rdfs:label": "anatamoicalSystem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:AnatomicalSystem" - } - ] - }, - { - "@id": "gbhBioSample:organ", - "@type": "rdf:Property", - "rdfs:comment": "Anatomical structure that performs a specific function or group of function.", - "rdfs:label": "organ", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:AnatomicalStructure" - } - ] - }, - { - "@id": "gbhBioSample:tissue", - "@type": "rdf:Property", - "rdfs:comment": "Indicate the tissue from which the sample was collected.", - "rdfs:label": "tissue", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:AnatomicalStructure" - } - ] - }, - { - "@id": "gbhBioSample:sex", - "@type": "rdf:Property", - "rdfs:comment": "The biological sex of the individual from which the sample was obtained.", - "rdfs:label": "sex", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:developmentalStage", - "@type": "rdf:Property", - "rdfs:comment": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.", - "rdfs:label": "developmentalStage", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:relationshipType", - "@type": "rdf:Property", - "rdfs:comment": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont.", - "rdfs:label": "relationshipType", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - } - ] -} \ No newline at end of file