inputs.json

{"Optimus.OptimusLoomGeneration.docker":"${}","Optimus.OptimusLoomGeneration.preemptible":"${}","Optimus.RunEmptyDrops.cpu":"${}","Optimus.RunEmptyDrops.disk":"${}","Optimus.RunEmptyDrops.docker":"${}","Optimus.RunEmptyDrops.fdr_cutoff":"${}","Optimus.RunEmptyDrops.machine_mem_mb":"${}","Optimus.RunEmptyDrops.min_molecules":"${}","Optimus.RunEmptyDrops.niters":"${}","Optimus.RunEmptyDrops.preemptible":"${}","Optimus.annotations_gtf":"${workspace.human_annotations_gtf}","Optimus.chemistry":"tenX_v2","Optimus.counting_mode":"${}","Optimus.emptydrops_lower":"${1}","Optimus.force_no_check":"${}","Optimus.i1_fastq":"${}","Optimus.input_id":"pbmc4k_human","Optimus.output_bam_basename":"${}","Optimus.r1_fastq":"${this.samples.r1_fastq}","Optimus.r2_fastq":"${this.samples.r2_fastq}","Optimus.ref_genome_fasta":"${workspace.human_ref_genome_fasta}","Optimus.tar_star_reference":"${workspace.human_tar_star_reference}","Optimus.whitelist":"${workspace.whitelist_v2}"}