From e35aca9234de629e61dad1d232768f5d162dd265 Mon Sep 17 00:00:00 2001 From: Alexandru Mahmoud Date: Tue, 7 May 2024 11:39:51 -0400 Subject: [PATCH] Disable bspm for base BiocManager installs --- builder.Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/builder.Dockerfile b/builder.Dockerfile index dd193a9..2baa0de 100644 --- a/builder.Dockerfile +++ b/builder.Dockerfile @@ -2,4 +2,4 @@ ARG BASE_IMAGE=ghcr.io/bioconductor/r2u ARG UBUNTU_TAG=jammy FROM ${BASE_IMAGE}:${UBUNTU_TAG} AS base ARG BIOC_VERSION=3.19 -RUN apt update -qq && apt install git-all build-essential binutils lintian debhelper dh-make devscripts curl vim dh-r -y && curl -O https://raw.githubusercontent.com/Bioconductor/bioconductor_docker/devel/bioc_scripts/install_bioc_sysdeps.sh && bash install_bioc_sysdeps.sh $BIOC_VERSION +RUN apt update -qq && apt install git-all build-essential binutils lintian debhelper dh-make devscripts curl vim dh-r -y && curl -O https://raw.githubusercontent.com/Bioconductor/bioconductor_docker/devel/bioc_scripts/install_bioc_sysdeps.sh && sed -i 's/install.packages("BiocManager"/bspm::disable(); install.packages("BiocManager"/g' install_bioc_sysdeps.sh && sed -i 's/BiocManager::install(version=/bspm::disable(); BiocManager::install(version=/g' install_bioc_sysdeps.sh && bash install_bioc_sysdeps.sh $BIOC_VERSION