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pipeline error #2

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octlie opened this issue Aug 16, 2017 · 0 comments
Open

pipeline error #2

octlie opened this issue Aug 16, 2017 · 0 comments

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@octlie
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octlie commented Aug 16, 2017

Hi there, I tried to run the pipeline for the 1st time, here is the input:
python /home/ovl/tvbpipe/workflows/TVB_pipeline.py -s 7586 -r /home/ovl/Desktop/tvbpipe_subjects/7586/output -a /home/ovl/Desktop/tvbpipe_subjects/7586/RAWDATA/MPRAGE/6_MPRAGE_T1/DICOM/CB_URC1028.MR.RIC_Modified_Protocols_TIM-II_Protocols.6.1.20151103.085339.k52kuv.dcm -d /home/ovl/Desktop/tvbpipe_subjects/7586/RAWDATA/DTI/21_hardi_0/DICOM/CB_URC1028.MR.RIC_Modified_Protocols_TIM-II_Protocols.21.1.20151103.085339.gd0agf.dcm -f /home/ovl/Desktop/tvbpipe_subjects/7586/RAWDATA/BOLD-EPI/2_Resting_States/DICOM/CB_URC1028.MR.RIC_Modified_Protocols_TIM-II_Protocols.2.1.20151103.085339.1uyli6q.dcm

and I get the following error:

File "/home/ovl/tvbpipe/workflows/TVB_pipeline.py", line 201, in
function = brainmodes.aggregate_connectivity),
File "/usr/local/anaconda/anaconda2/lib/python2.7/site-packages/nipype/interfaces/utility/wrappers.py", line 87, in init
self.inputs.function_str = getsource(function)
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 417: ordinal not in range(128)

Is this because of the complicated dcm file names, if not what could be the cause?

Thank you,

Octavian

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