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classifyfromimage1.java
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/*
* To change this license header, choose License Headers in Project Properties.
* To change this template file, choose Tools | Templates
* and open the template in the editor.
*/
import ij.IJ;
import static ij.IJ.URL;
import static ij.IJ.selectWindow;
import ij.ImagePlus;
import ij.Prefs;
import ij.WindowManager;
import ij.plugin.frame.RoiManager;
import java.awt.FlowLayout;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.IOException;
import java.io.InputStream;
import java.io.PrintWriter;
import java.net.URL;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Map;
import java.util.Vector;
import java.util.logging.Level;
import java.util.logging.Logger;
import javax.swing.JButton;
import javax.swing.JFrame;
import weka.classifiers.Classifier;
import weka.core.Instances;
import weka.core.Utils;
import weka.core.converters.ArffSaver;
import weka.core.converters.CSVLoader;
import weka.filters.Filter;
import weka.filters.unsupervised.attribute.Add;
import weka.classifiers.Classifier;
import weka.core.Instances;
import weka.core.Utils;
import weka.core.converters.ArffSaver;
import weka.core.converters.CSVLoader;
import weka.filters.Filter;
//import weka.filters.Filter;
import weka.filters.unsupervised.attribute.Add;
import org.pentaho.packageManagement.PackageManager;
import weka.core.Instances;
import weka.core.converters.ArffSaver;
import weka.core.converters.CSVLoader;
import weka.core.WekaPackageManager;
import weka.core.Instances;
import weka.classifiers.Classifier;
import weka.classifiers.Evaluation;
import weka.classifiers.bayes.NaiveBayes;
import weka.classifiers.evaluation.output.prediction.PlainText;
import weka.classifiers.functions.SMOreg;
import weka.core.Instance;
import weka.core.Instances;
import weka.core.converters.ConverterUtils.DataSource;
import weka.classifiers.rules.DecisionTable;
import weka.core.Debug.Random;
import weka.core.Range;
import weka.core.converters.ArffSaver;
import weka.core.converters.CSVLoader;
import weka.core.pmml.jaxbbindings.NaiveBayesModel;
import weka.classifiers.bayes.NaiveBayes;
import weka.classifiers.evaluation.Prediction;
import weka.classifiers.functions.MultilayerPerceptron;
import weka.classifiers.misc.SerializedClassifier;
import weka.classifiers.trees.J48;
import weka.classifiers.functions.MultilayerPerceptron;
import weka.core.Attribute;
import static weka.core.Debug.DBO.p;
import weka.core.Environment;
import weka.core.FastVector;
import weka.core.SerializationHelper;
import static weka.core.SerializationHelper.write;
import weka.core.Utils;
import weka.core.converters.ArffLoader.ArffReader;
import static weka.core.converters.ConverterUtils.DataSink.write;
import static weka.core.converters.ConverterUtils.DataSink.write;
import weka.core.converters.Loader;
import weka.core.converters.TextDirectoryLoader;
import weka.filters.Filter;
import weka.filters.unsupervised.attribute.Add;
import weka.filters.unsupervised.attribute.StringToWordVector;
import static weka.gui.explorer.ExplorerDefaults.set;
/**
*
* @author usuario
*/
public class classifyfromimage1 extends javax.swing.JFrame {
public ArrayList<String> classif = new ArrayList<String>();
private String name3;
private String name4;
private Object txtarea;
private String image;
private ImagePlus imp;
public String valor1;
public String valor2;
public String text;
void v() {
//MachinLearningInterface.liststring.getClass();
}
/**
* Creates new form NewJFrame1
*/
public classifyfromimage1() {
initComponents();
txtpath.setVisible(false);
}
/**
* This method is called from within the constructor to initialize the form.
* WARNING: Do NOT modify this code. The content of this method is always
* regenerated by the Form Editor.
*/
@SuppressWarnings("unchecked")
// <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
private void initComponents() {
jScrollPane1 = new javax.swing.JScrollPane();
jTextArea1 = new javax.swing.JTextArea();
interval1 = new javax.swing.JTextField();
jLabel9 = new javax.swing.JLabel();
interval2 = new javax.swing.JTextField();
jLabel10 = new javax.swing.JLabel();
jLabel1 = new javax.swing.JLabel();
jButton1 = new javax.swing.JButton();
jButton2 = new javax.swing.JButton();
txtlabel = new javax.swing.JTextField();
txtpath = new javax.swing.JTextField();
txtpath2 = new javax.swing.JTextField();
txtpath3 = new javax.swing.JTextField();
interval3 = new javax.swing.JTextField();
jLabel11 = new javax.swing.JLabel();
interval4 = new javax.swing.JTextField();
jLabel12 = new javax.swing.JLabel();
jMenuBar1 = new javax.swing.JMenuBar();
jMenu2 = new javax.swing.JMenu();
jMenuItem1 = new javax.swing.JMenuItem();
jMenuItem2 = new javax.swing.JMenuItem();
jMenu9 = new javax.swing.JMenu();
jMenuItem3 = new javax.swing.JMenuItem();
jMenuItem4 = new javax.swing.JMenuItem();
jMenuItem5 = new javax.swing.JMenuItem();
jTextArea1.setColumns(20);
jTextArea1.setRows(5);
jScrollPane1.setViewportView(jTextArea1);
interval1.setEditable(false);
interval1.setForeground(new java.awt.Color(153, 153, 153));
interval1.setText("15.000");
interval1.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
interval1ActionPerformed(evt);
}
});
jLabel9.setText("Lower limit");
interval2.setEditable(false);
interval2.setForeground(new java.awt.Color(153, 153, 153));
interval2.setText("1.000E16");
interval2.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
interval2ActionPerformed(evt);
}
});
jLabel10.setText("Upper limit");
setDefaultCloseOperation(javax.swing.WindowConstants.EXIT_ON_CLOSE);
jLabel1.setText("Select your region of interest from your image ");
jButton1.setIcon(new javax.swing.ImageIcon(getClass().getResource("/correct.png"))); // NOI18N
jButton1.setText("OK");
jButton1.setToolTipText("");
jButton1.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jButton1ActionPerformed(evt);
}
});
jButton2.setIcon(new javax.swing.ImageIcon(getClass().getResource("/Untitled-4.png"))); // NOI18N
jButton2.setText("Cancel");
jButton2.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jButton2ActionPerformed(evt);
}
});
txtlabel.setEditable(false);
txtlabel.setBackground(new java.awt.Color(255, 255, 255));
txtlabel.setForeground(new java.awt.Color(153, 153, 153));
txtlabel.setText("(You have not set your labels!");
txtlabel.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
txtlabelActionPerformed(evt);
}
});
txtpath.setEditable(false);
txtpath.setForeground(new java.awt.Color(232, 232, 232));
txtpath.setText("jTextField1");
txtpath.setBorder(null);
txtpath.setDisabledTextColor(new java.awt.Color(232, 232, 232));
txtpath.setSelectedTextColor(new java.awt.Color(232, 232, 232));
txtpath.setSelectionColor(new java.awt.Color(232, 232, 232));
txtpath.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
txtpathActionPerformed(evt);
}
});
txtpath2.setEditable(false);
txtpath2.setForeground(new java.awt.Color(232, 232, 232));
txtpath2.setText("jTextField1");
txtpath2.setBorder(null);
txtpath2.setDisabledTextColor(new java.awt.Color(232, 232, 232));
txtpath2.setEnabled(false);
txtpath2.setFocusable(false);
txtpath2.setSelectedTextColor(new java.awt.Color(232, 232, 232));
txtpath2.setSelectionColor(new java.awt.Color(232, 232, 232));
txtpath2.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
txtpath2ActionPerformed(evt);
}
});
txtpath3.setEditable(false);
txtpath3.setForeground(new java.awt.Color(232, 232, 232));
txtpath3.setText("jTextField1");
txtpath3.setBorder(null);
txtpath3.setDisabledTextColor(new java.awt.Color(232, 232, 232));
txtpath3.setEnabled(false);
txtpath3.setFocusable(false);
txtpath3.setSelectedTextColor(new java.awt.Color(232, 232, 232));
txtpath3.setSelectionColor(new java.awt.Color(232, 232, 232));
txtpath3.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
txtpath3ActionPerformed(evt);
}
});
interval3.setEditable(false);
interval3.setForeground(new java.awt.Color(153, 153, 153));
interval3.setText("You have not set a Lower limit");
interval3.setFocusable(false);
interval3.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
interval3ActionPerformed(evt);
}
});
jLabel11.setText("Lower limit");
interval4.setEditable(false);
interval4.setForeground(new java.awt.Color(153, 153, 153));
interval4.setText("You have not set a Upper limit");
interval4.setFocusable(false);
interval4.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
interval4ActionPerformed(evt);
}
});
jLabel12.setText("Upper limit");
jMenu2.setIcon(new javax.swing.ImageIcon(getClass().getResource("/options.png"))); // NOI18N
jMenu2.setText("Selection Tool");
jMenu2.addMouseListener(new java.awt.event.MouseAdapter() {
public void mouseClicked(java.awt.event.MouseEvent evt) {
jMenu2MouseClicked(evt);
}
});
jMenuItem1.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F2, 0));
jMenuItem1.setIcon(new javax.swing.ImageIcon(getClass().getResource("/options.png"))); // NOI18N
jMenuItem1.setText("Free Selection ");
jMenuItem1.addMouseListener(new java.awt.event.MouseAdapter() {
public void mouseClicked(java.awt.event.MouseEvent evt) {
jMenuItem1MouseClicked(evt);
}
});
jMenuItem1.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jMenuItem1ActionPerformed(evt);
}
});
jMenu2.add(jMenuItem1);
jMenuItem2.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F3, 0));
jMenuItem2.setIcon(new javax.swing.ImageIcon(getClass().getResource("/options.png"))); // NOI18N
jMenuItem2.setText("Rectangular Selection ");
jMenuItem2.addMouseListener(new java.awt.event.MouseAdapter() {
public void mouseClicked(java.awt.event.MouseEvent evt) {
jMenuItem2MouseClicked(evt);
}
});
jMenuItem2.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jMenuItem2ActionPerformed(evt);
}
});
jMenu2.add(jMenuItem2);
jMenuBar1.add(jMenu2);
jMenu9.setIcon(new javax.swing.ImageIcon(getClass().getResource("/tools.png"))); // NOI18N
jMenu9.setText("Options");
jMenu9.addMouseListener(new java.awt.event.MouseAdapter() {
public void mouseClicked(java.awt.event.MouseEvent evt) {
jMenu9MouseClicked(evt);
}
});
jMenu9.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jMenu9ActionPerformed(evt);
}
});
jMenuItem3.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F4, 0));
jMenuItem3.setIcon(new javax.swing.ImageIcon(getClass().getResource("/trash.png"))); // NOI18N
jMenuItem3.setText("Clear Selection");
jMenuItem3.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jMenuItem3ActionPerformed(evt);
}
});
jMenu9.add(jMenuItem3);
jMenuItem4.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F5, 0));
jMenuItem4.setIcon(new javax.swing.ImageIcon(getClass().getResource("/back.png"))); // NOI18N
jMenuItem4.setText("jMenuItem1");
jMenuItem4.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jMenuItem4ActionPerformed(evt);
}
});
jMenu9.add(jMenuItem4);
jMenuItem5.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F6, 0));
jMenuItem5.setIcon(new javax.swing.ImageIcon(getClass().getResource("/all.png"))); // NOI18N
jMenuItem5.setText("Select All");
jMenuItem5.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jMenuItem5ActionPerformed(evt);
}
});
jMenu9.add(jMenuItem5);
jMenuBar1.add(jMenu9);
setJMenuBar(jMenuBar1);
javax.swing.GroupLayout layout = new javax.swing.GroupLayout(getContentPane());
getContentPane().setLayout(layout);
layout.setHorizontalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addContainerGap()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addComponent(jButton1, javax.swing.GroupLayout.PREFERRED_SIZE, 103, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(jButton2))
.addGroup(javax.swing.GroupLayout.Alignment.TRAILING, layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
.addGroup(layout.createSequentialGroup()
.addGap(59, 59, 59)
.addComponent(txtlabel, javax.swing.GroupLayout.PREFERRED_SIZE, 159, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(txtpath, javax.swing.GroupLayout.PREFERRED_SIZE, 26, javax.swing.GroupLayout.PREFERRED_SIZE)
.addGap(0, 0, Short.MAX_VALUE))
.addGroup(layout.createSequentialGroup()
.addComponent(txtpath2, javax.swing.GroupLayout.PREFERRED_SIZE, 26, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(jLabel1)))
.addGap(1, 1, 1)
.addComponent(txtpath3, javax.swing.GroupLayout.PREFERRED_SIZE, 26, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addContainerGap())
.addGroup(javax.swing.GroupLayout.Alignment.TRAILING, layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
.addGroup(layout.createSequentialGroup()
.addComponent(interval4)
.addGap(18, 18, 18)
.addComponent(jLabel12))
.addGroup(layout.createSequentialGroup()
.addComponent(interval3, javax.swing.GroupLayout.PREFERRED_SIZE, 158, javax.swing.GroupLayout.PREFERRED_SIZE)
.addGap(18, 18, 18)
.addComponent(jLabel11)))
.addGap(67, 67, 67))))
);
layout.setVerticalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel1, javax.swing.GroupLayout.PREFERRED_SIZE, 25, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(txtpath2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(txtpath3, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(txtpath, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(txtlabel, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jButton1, javax.swing.GroupLayout.PREFERRED_SIZE, 47, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(jButton2))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 10, Short.MAX_VALUE)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(interval3, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(jLabel11))
.addGap(8, 8, 8)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel12)
.addComponent(interval4, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addContainerGap())
);
txtpath3.getAccessibleContext().setAccessibleName("info");
pack();
}// </editor-fold>//GEN-END:initComponents
private void jButton1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButton1ActionPerformed
selectWindow(this.name3);
this.name3 = IJ.getImage().getTitle();
this.name4 = this.name3.replaceFirst("[.][^.]+$", "");
RoiManager rm = RoiManager.getInstance();
IJ.run("Duplicate...", this.name4);
IJ.run("Set Measurements...", "area perimeter fit shape limit scientific redirect=None decimal=5");
selectWindow(this.name3);
IJ.run("Subtract Background...", "rolling=1.5");
IJ.run("Enhance Contrast...", "saturated=25 equalize");
IJ.run("Subtract Background...", "rolling=1.5");
IJ.run("Convolve...", "text1=[-1 -3 -4 -3 -1\n-3 0 6 0 -3\n-4 6 50 6 -4\n-3 0 6 0 -3\n-1 -3 -4 -3 -1\n] normalize");
IJ.run("8-bit", "");
IJ.run("Restore Selection", "");
IJ.run("Make Binary", "");
Prefs.blackBackground = false;
IJ.run("Convert to Mask", "");
IJ.run("Restore Selection", "");
this.valor1 = this.interval3.getText();
this.valor2 = this.interval4.getText();
this.text = "size=" + this.valor1 + "-" + this.valor2 + " pixel show=Outlines display include summarize add";
IJ.saveAs("tif", this.name3 + "_processed");
String dest_filename1, dest_filename2, full;
selectWindow("Results");
//dest_filename1 = this.name2 + "_complete.txt";
dest_filename2 = this.name3 + "_complete.csv";
//IJ.saveAs("Results", prova + File.separator + dest_filename1);
IJ.run("Input/Output...", "jpeg=85 gif=-1 file=.csv copy_row save_column save_row");
//IJ.saveAs("Results", dir + File.separator + dest_filename2);
IJ.saveAs("Results", this.name3 + "_complete.csv");
IJ.run("Restore Selection");
IJ.run("Clear Results");
try {
CSVLoader loader = new CSVLoader();
loader.setSource(new File(this.name3 + "_complete.csv"));
Instances data = loader.getDataSet();
System.out.println(data);
// save ARFF
String arffile = this.name3 + ".arff";
System.out.println(arffile);
ArffSaver saver = new ArffSaver();
saver.setInstances(data);
saver.setFile(new File(arffile));
saver.writeBatch();
} catch (IOException ex) {
Logger.getLogger(MachinLearningInterface.class.getName()).log(Level.SEVERE, null, ex);
}
Instances data;
try {
data = new Instances(new BufferedReader(new FileReader(this.name3 + ".arff")));
Instances newData = null;
Add filter;
newData = new Instances(data);
filter = new Add();
filter.setAttributeIndex("last");
filter.setNominalLabels(txtlabel.getText());
filter.setAttributeName(txtpath2.getText());
filter.setInputFormat(newData);
newData = Filter.useFilter(newData, filter);
System.out.print(newData);
Vector vec = new Vector();
newData.setClassIndex(newData.numAttributes() - 1);
if (!newData.equalHeaders(newData)) {
throw new IllegalArgumentException("Train and test are not compatible!");
}
Classifier cls = (Classifier) weka.core.SerializationHelper.read(txtpath.getText());
System.out.println("PROVANT MODEL.classifyInstance");
for (int i = 0; i < newData.numInstances(); i++) {
double pred = cls.classifyInstance(newData.instance(i));
double[] dist = cls.distributionForInstance(newData.instance(i));
System.out.print((i + 1) + " - ");
System.out.print(newData.classAttribute().value((int) pred) + " - ");
//txtarea2.setText(Utils.arrayToString(dist));
System.out.println(Utils.arrayToString(dist));
vec.add(newData.classAttribute().value((int) pred));
//txtarea2.append(Utils.arrayToString(dist));
classif.add(newData.classAttribute().value((int) pred));
}
classif.removeAll(Arrays.asList("", null));
System.out.println(classif);
String vecstring = "";
for (Object s : classif) {
vecstring += s + ",";
System.out.println("Hola " + vecstring);
}
Map<String, Integer> seussCount = new HashMap<String, Integer>();
for (String t : classif) {
Integer i = seussCount.get(t);
if (i == null) {
i = 0;
}
seussCount.put(t, i + 1);
}
String s = vecstring;
int counter = 0;
for( int i=0; i<s.length(); i++ ) {
if( s.charAt(i) == '$' ) {
counter++;
}
}
System.out.println(seussCount);
System.out.println("hola "+ counter++);
IJ.showMessage("Your file:" + this.name3 + "arff"
+ "\n is composed by" + seussCount);
txtpath2.setText("Your file:" + this.name3 + "arff"
+ "\n is composed by" + seussCount);
A_MachineLearning nf2 = new A_MachineLearning();
A_MachineLearning.txtresult2.append(this.txtpath2.getText());
nf2.setVisible(true);
} catch (Exception ex) {
Logger.getLogger(MachinLearningInterface.class.getName()).log(Level.SEVERE, null, ex);
}
IJ.run("Close All", "");
if (WindowManager.getFrame("Results") != null) {
IJ.selectWindow("Results");
IJ.run("Close");
}
if (WindowManager.getFrame("Summary") != null) {
IJ.selectWindow("Summary");
IJ.run("Close");
}
if (WindowManager.getFrame("Results") != null) {
IJ.selectWindow("Results");
IJ.run("Close");
}
if (WindowManager.getFrame("ROI Manager") != null) {
IJ.selectWindow("ROI Manager");
IJ.run("Close");
}
setVisible(false);
dispose();// TODO add your handling code here:
// TODO add your handling code here:
}//GEN-LAST:event_jButton1ActionPerformed
private void jButton2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButton2ActionPerformed
setVisible(false);
dispose();// TODO add your handling code here: // TODO add your handling code here:
}//GEN-LAST:event_jButton2ActionPerformed
private void txtlabelActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_txtlabelActionPerformed
// TODO add your handling code here:
}//GEN-LAST:event_txtlabelActionPerformed
private void txtpathActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_txtpathActionPerformed
// TODO add your handling code here:
}//GEN-LAST:event_txtpathActionPerformed
private void jMenuItem1MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_jMenuItem1MouseClicked
IJ.setTool("freehand"); // TODO add your handling code here: // TODO add your handling code here:
}//GEN-LAST:event_jMenuItem1MouseClicked
private void jMenuItem1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem1ActionPerformed
IJ.setTool("freehand"); // TODO add your handling code here: // TODO add your handling code here:
}//GEN-LAST:event_jMenuItem1ActionPerformed
private void jMenuItem2MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_jMenuItem2MouseClicked
IJ.setTool("rectangle");// TODO add your handling code here: // TODO add your handling code here:
}//GEN-LAST:event_jMenuItem2MouseClicked
private void jMenuItem2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem2ActionPerformed
IJ.setTool("rectangle"); // TODO add your handling code here:
}//GEN-LAST:event_jMenuItem2ActionPerformed
private void jMenu2MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_jMenu2MouseClicked
// TODO add your handling code here:
}//GEN-LAST:event_jMenu2MouseClicked
private void jMenuItem3ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem3ActionPerformed
IJ.run(this.imp, "Select None", ""); // TODO add your handling code here:
}//GEN-LAST:event_jMenuItem3ActionPerformed
private void jMenuItem4ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem4ActionPerformed
IJ.run("Restore Selection", ""); // TODO add your handling code here:
}//GEN-LAST:event_jMenuItem4ActionPerformed
private void jMenuItem5ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem5ActionPerformed
IJ.run(imp, "Select All", ""); // TODO add your handling code here:
}//GEN-LAST:event_jMenuItem5ActionPerformed
private void jMenu9MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_jMenu9MouseClicked
// TODO add your handling code here:
}//GEN-LAST:event_jMenu9MouseClicked
private void jMenu9ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenu9ActionPerformed
// TODO add your handling code here:
}//GEN-LAST:event_jMenu9ActionPerformed
private void txtpath2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_txtpath2ActionPerformed
// TODO add your handling code here:
}//GEN-LAST:event_txtpath2ActionPerformed
private void txtpath3ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_txtpath3ActionPerformed
// TODO add your handling code here:
}//GEN-LAST:event_txtpath3ActionPerformed
private void interval1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_interval1ActionPerformed
// TODO add your handling code here:
}//GEN-LAST:event_interval1ActionPerformed
private void interval2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_interval2ActionPerformed
}//GEN-LAST:event_interval2ActionPerformed
private void interval3ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_interval3ActionPerformed
// TODO add your handling code here:
}//GEN-LAST:event_interval3ActionPerformed
private void interval4ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_interval4ActionPerformed
}//GEN-LAST:event_interval4ActionPerformed
/**
* @param args the command line arguments
*/
public static void main(String args[]) {
/* Set the Nimbus look and feel */
//<editor-fold defaultstate="collapsed" desc=" Look and feel setting code (optional) ">
/* If Nimbus (introduced in Java SE 6) is not available, stay with the default look and feel.
* For details see http://download.oracle.com/javase/tutorial/uiswing/lookandfeel/plaf.html
*/
try {
for (javax.swing.UIManager.LookAndFeelInfo info : javax.swing.UIManager.getInstalledLookAndFeels()) {
if ("Nimbus".equals(info.getName())) {
javax.swing.UIManager.setLookAndFeel(info.getClassName());
break;
}
}
} catch (ClassNotFoundException ex) {
java.util.logging.Logger.getLogger(classifyfromimage.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
} catch (InstantiationException ex) {
java.util.logging.Logger.getLogger(classifyfromimage.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
} catch (IllegalAccessException ex) {
java.util.logging.Logger.getLogger(classifyfromimage.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
} catch (javax.swing.UnsupportedLookAndFeelException ex) {
java.util.logging.Logger.getLogger(classifyfromimage.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
}
//</editor-fold>
//</editor-fold>
//</editor-fold>
//</editor-fold>
/* Create and display the form */
/*java.awt.EventQueue.invokeLater(new Runnable() {
public void run() {
new classifyfromimage().setVisible(true);
}
});*/
new classifyfromimage().setVisible(true);
}
// Variables declaration - do not modify//GEN-BEGIN:variables
public static javax.swing.JTextField interval1;
public static javax.swing.JTextField interval2;
public static javax.swing.JTextField interval3;
public static javax.swing.JTextField interval4;
private javax.swing.JButton jButton1;
private javax.swing.JButton jButton2;
private javax.swing.JLabel jLabel1;
private javax.swing.JLabel jLabel10;
private javax.swing.JLabel jLabel11;
private javax.swing.JLabel jLabel12;
private javax.swing.JLabel jLabel9;
private javax.swing.JMenu jMenu2;
private javax.swing.JMenu jMenu9;
private javax.swing.JMenuBar jMenuBar1;
private javax.swing.JMenuItem jMenuItem1;
private javax.swing.JMenuItem jMenuItem2;
private javax.swing.JMenuItem jMenuItem3;
private javax.swing.JMenuItem jMenuItem4;
private javax.swing.JMenuItem jMenuItem5;
private javax.swing.JScrollPane jScrollPane1;
private javax.swing.JTextArea jTextArea1;
public static javax.swing.JTextField txtlabel;
public static javax.swing.JTextField txtpath;
public static javax.swing.JTextField txtpath2;
public static javax.swing.JTextField txtpath3;
// End of variables declaration//GEN-END:variables
}