dialog1.java

/*
 * To change this license header, choose License Headers in Project Properties.
 * To change this template file, choose Tools | Templates
 * and open the template in the editor.
 */

import ij.IJ;
import static ij.IJ.URL;
import static ij.IJ.selectWindow;
import ij.ImagePlus;
import ij.Prefs;
import ij.WindowManager;
import ij.plugin.frame.RoiManager;
import java.awt.FlowLayout;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.IOException;
import java.io.InputStream;
import java.io.PrintWriter;
import java.net.URL;
import java.util.Vector;
import java.util.logging.Level;
import java.util.logging.Logger;
import javax.swing.JButton;
import javax.swing.JFrame;
import weka.classifiers.Classifier;
import weka.core.Instances;
import weka.core.Utils;
import weka.core.converters.ArffSaver;
import weka.core.converters.CSVLoader;
import weka.filters.Filter;
import weka.filters.unsupervised.attribute.Add;

/**
 *
 * @author usuario
 */
public class dialog1 extends javax.swing.JFrame {

    private String name3;
    private Object txtarea;
    private String image;
    private ImagePlus imp;
    

    void v(){
        //MachinLearningInterface.liststring.getClass();
    }
    /**
     * Creates new form NewJFrame1
     */
    public dialog1() {
        initComponents();
txtfilename.setVisible(false);
    }

    /**
     * This method is called from within the constructor to initialize the form.
     * WARNING: Do NOT modify this code. The content of this method is always
     * regenerated by the Form Editor.
     */
    @SuppressWarnings("unchecked")
    // <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
    private void initComponents() {

        jLabel1 = new javax.swing.JLabel();
        jButton1 = new javax.swing.JButton();
        jButton2 = new javax.swing.JButton();
        txtfilename = new javax.swing.JTextField();
        jLabel2 = new javax.swing.JLabel();
        jMenuBar1 = new javax.swing.JMenuBar();
        jMenu2 = new javax.swing.JMenu();
        jMenuItem1 = new javax.swing.JMenuItem();
        jMenuItem2 = new javax.swing.JMenuItem();
        jMenu9 = new javax.swing.JMenu();
        jMenuItem3 = new javax.swing.JMenuItem();
        jMenuItem4 = new javax.swing.JMenuItem();
        jMenuItem5 = new javax.swing.JMenuItem();

        setDefaultCloseOperation(javax.swing.WindowConstants.EXIT_ON_CLOSE);

        jLabel1.setText("Would you like to classify your results with");

        jButton1.setIcon(new javax.swing.ImageIcon(getClass().getResource("/correct.png"))); // NOI18N
        jButton1.setText("OK");
        jButton1.setToolTipText("");
        jButton1.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jButton1ActionPerformed(evt);
            }
        });

        jButton2.setIcon(new javax.swing.ImageIcon(getClass().getResource("/Untitled-4.png"))); // NOI18N
        jButton2.setText("Cancel");
        jButton2.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jButton2ActionPerformed(evt);
            }
        });

        txtfilename.setEditable(false);
        txtfilename.setForeground(new java.awt.Color(232, 232, 232));
        txtfilename.setText("jTextField1");
        txtfilename.setBorder(null);
        txtfilename.setDisabledTextColor(new java.awt.Color(232, 232, 232));
        txtfilename.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                txtfilenameActionPerformed(evt);
            }
        });

        jLabel2.setText("our machin learning model of classification?");

        jMenu2.setIcon(new javax.swing.ImageIcon(getClass().getResource("/options.png"))); // NOI18N
        jMenu2.setText("Selection Tool");
        jMenu2.addMouseListener(new java.awt.event.MouseAdapter() {
            public void mouseClicked(java.awt.event.MouseEvent evt) {
                jMenu2MouseClicked(evt);
            }
        });

        jMenuItem1.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F2, 0));
        jMenuItem1.setIcon(new javax.swing.ImageIcon(getClass().getResource("/options.png"))); // NOI18N
        jMenuItem1.setText("Free Selection ");
        jMenuItem1.addMouseListener(new java.awt.event.MouseAdapter() {
            public void mouseClicked(java.awt.event.MouseEvent evt) {
                jMenuItem1MouseClicked(evt);
            }
        });
        jMenuItem1.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jMenuItem1ActionPerformed(evt);
            }
        });
        jMenu2.add(jMenuItem1);

        jMenuItem2.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F3, 0));
        jMenuItem2.setIcon(new javax.swing.ImageIcon(getClass().getResource("/options.png"))); // NOI18N
        jMenuItem2.setText("Rectangular Selection ");
        jMenuItem2.addMouseListener(new java.awt.event.MouseAdapter() {
            public void mouseClicked(java.awt.event.MouseEvent evt) {
                jMenuItem2MouseClicked(evt);
            }
        });
        jMenuItem2.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jMenuItem2ActionPerformed(evt);
            }
        });
        jMenu2.add(jMenuItem2);

        jMenuBar1.add(jMenu2);

        jMenu9.setIcon(new javax.swing.ImageIcon(getClass().getResource("/tools.png"))); // NOI18N
        jMenu9.setText("Options");
        jMenu9.addMouseListener(new java.awt.event.MouseAdapter() {
            public void mouseClicked(java.awt.event.MouseEvent evt) {
                jMenu9MouseClicked(evt);
            }
        });
        jMenu9.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jMenu9ActionPerformed(evt);
            }
        });

        jMenuItem3.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F4, 0));
        jMenuItem3.setIcon(new javax.swing.ImageIcon(getClass().getResource("/trash.png"))); // NOI18N
        jMenuItem3.setText("Clear Selection");
        jMenuItem3.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jMenuItem3ActionPerformed(evt);
            }
        });
        jMenu9.add(jMenuItem3);

        jMenuItem4.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F5, 0));
        jMenuItem4.setIcon(new javax.swing.ImageIcon(getClass().getResource("/back.png"))); // NOI18N
        jMenuItem4.setText("jMenuItem1");
        jMenuItem4.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jMenuItem4ActionPerformed(evt);
            }
        });
        jMenu9.add(jMenuItem4);

        jMenuItem5.setAccelerator(javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_F6, 0));
        jMenuItem5.setIcon(new javax.swing.ImageIcon(getClass().getResource("/all.png"))); // NOI18N
        jMenuItem5.setText("Select All");
        jMenuItem5.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jMenuItem5ActionPerformed(evt);
            }
        });
        jMenu9.add(jMenuItem5);

        jMenuBar1.add(jMenu9);

        setJMenuBar(jMenuBar1);

        javax.swing.GroupLayout layout = new javax.swing.GroupLayout(getContentPane());
        getContentPane().setLayout(layout);
        layout.setHorizontalGroup(
            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(layout.createSequentialGroup()
                .addContainerGap()
                .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(layout.createSequentialGroup()
                        .addComponent(jButton1, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                        .addGap(18, 18, 18)
                        .addComponent(jButton2))
                    .addGroup(layout.createSequentialGroup()
                        .addGap(227, 227, 227)
                        .addComponent(txtfilename, javax.swing.GroupLayout.PREFERRED_SIZE, 16, javax.swing.GroupLayout.PREFERRED_SIZE)
                        .addGap(0, 0, Short.MAX_VALUE)))
                .addContainerGap())
            .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, layout.createSequentialGroup()
                .addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
                    .addComponent(jLabel2)
                    .addComponent(jLabel1))
                .addGap(20, 20, 20))
        );
        layout.setVerticalGroup(
            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(layout.createSequentialGroup()
                .addComponent(txtfilename, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                .addGap(2, 2, 2)
                .addComponent(jLabel1)
                .addGap(5, 5, 5)
                .addComponent(jLabel2)
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jButton1, javax.swing.GroupLayout.PREFERRED_SIZE, 47, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jButton2)))
        );

        pack();
    }// </editor-fold>//GEN-END:initComponents

    private void jButton1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButton1ActionPerformed
       
        try {
            CSVLoader loader = new CSVLoader();
            loader.setSource(new File(txtfilename.getText()+"_complete.csv"));
            Instances data = loader.getDataSet();
            System.out.println(data);

            // save ARFF
            String arffile = this.name3 + ".arff";
            System.out.println(arffile);
            ArffSaver saver = new ArffSaver();
            saver.setInstances(data);
            saver.setFile(new File(arffile));
            saver.writeBatch();
        } catch (IOException ex) {
            Logger.getLogger(MachinLearningInterface.class.getName()).log(Level.SEVERE, null, ex);
        }
        
        Instances data;
        try {
            data = new Instances(new BufferedReader(new FileReader(this.name3 + ".arff")));
            Instances newData = null;
            Add filter;
            newData = new Instances(data);
            filter = new Add();
            filter.setAttributeIndex("last");
            filter.setNominalLabels("rods,punctua,networks");
            filter.setAttributeName("target");
            filter.setInputFormat(newData);
            newData = Filter.useFilter(newData, filter);
            System.out.print(newData);
            Vector vec = new Vector();
            newData.setClassIndex(newData.numAttributes() - 1);
            if (!newData.equalHeaders(newData)) {
                throw new IllegalArgumentException("Train and test are not compatible!");
            }

            /*URL urlToModel = this.getClass().getResource("/" + "Final.model");
            InputStream stream = urlToModel.openStream();*/
InputStream stream= this.getClass().getResourceAsStream("/" + "Final.model");
            Classifier cls = (Classifier) weka.core.SerializationHelper.read(stream);
            System.out.println("PROVANT MODEL.classifyInstance");
            for (int i = 0; i < newData.numInstances(); i++) {
                double pred = cls.classifyInstance(newData.instance(i));
                double[] dist = cls.distributionForInstance(newData.instance(i));
                System.out.print((i + 1) + " - ");
                System.out.print(newData.classAttribute().value((int) pred) + " - ");
                //txtarea2.setText(Utils.arrayToString(dist));

                System.out.println(Utils.arrayToString(dist));

                vec.add(newData.classAttribute().value((int) pred));
                //txtarea2.append(Utils.arrayToString(newData.classAttribute().value((int) pred)));
                //this.target2.add((i + 1) + " -);
                //this.target.add(newData.classAttribute().value((int) pred));
                //for (String s : this.list) {
                //this.target2 += s + ",";

            }
            int p = 0, n = 0, r = 0;

            //txtarea2.append(Utils.arrayToString(this.target));
            for (Object vec1 : vec) {
                if ("rods".equals(vec1.toString())) {
                    r = r + 1;
                }
                if ("punctua".equals(vec1.toString())) {
                    p = p + 1;
                }
                if ("networks".equals(vec1.toString())) {
                    n = n + 1;
                }

                PrintWriter out = null;
                try {

                    out = new PrintWriter(this.name3 + "_morphology.txt");
                    out.println(vec);
                    out.close();
                } catch (Exception ex) {
                    ex.printStackTrace();
                }
                //System.out.println(vec.get(i));
            }
            System.out.println("VECTOR-> punctua: " + p + ", rods: " + r + ", networks: " + n);
            IJ.showMessage("Your file:" + this.name3 + "arff"
                    + "\nhas been analysed, and it is composed by-> punctua: " + p + ", rods: " + r + ", networks: " + n);
            //txtarea2.setText("Your file:" + this.name3 + ".arff"
            //+ "\nhas been analysed, and it is composed by-> punctua: " + p + ", rods: " + r + ", networks: " + n
            //+ "\n"
            //+ "\nAnalyse complete");
            //txtarea.setText("Analyse complete");

        } catch (IOException ex) {
            Logger.getLogger(MachinLearningInterface.class.getName()).log(Level.SEVERE, null, ex);
        } catch (Exception ex) {
            Logger.getLogger(MachinLearningInterface.class.getName()).log(Level.SEVERE, null, ex);
        }

        IJ.run("Clear Results");
        IJ.run("Clear Results");
        IJ.run("Close All", "");

        if (WindowManager.getFrame("Results") != null) {
            IJ.selectWindow("Results");
            IJ.run("Close");
        }
        if (WindowManager.getFrame("Summary") != null) {
            IJ.selectWindow("Summary");
            IJ.run("Close");
        }
        if (WindowManager.getFrame("Results") != null) {
            IJ.selectWindow("Results");
            IJ.run("Close");
        }
        if (WindowManager.getFrame("ROI Manager") != null) {
            IJ.selectWindow("ROI Manager");
            IJ.run("Close");
        }
        IJ.run("Close All", "roiManager");
        IJ.run("Close All", "");
        setVisible(false);
        dispose();// TODO add your handling code here:

        setVisible(false);
        dispose();// TODO add your handling code here:
        // TODO add your handling code here:
    }//GEN-LAST:event_jButton1ActionPerformed

    private void jButton2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButton2ActionPerformed
        setVisible(false);
        dispose();// TODO add your handling code here:        // TODO add your handling code here:
    }//GEN-LAST:event_jButton2ActionPerformed

    private void jMenuItem3ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem3ActionPerformed
        IJ.run(this.imp, "Select None", "");         // TODO add your handling code here:
    }//GEN-LAST:event_jMenuItem3ActionPerformed

    private void jMenuItem4ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem4ActionPerformed
        IJ.run("Restore Selection", "");        // TODO add your handling code here:
    }//GEN-LAST:event_jMenuItem4ActionPerformed

    private void jMenuItem5ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem5ActionPerformed
        IJ.run(imp, "Select All", "");        // TODO add your handling code here:
    }//GEN-LAST:event_jMenuItem5ActionPerformed

    private void jMenu9MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_jMenu9MouseClicked
        // TODO add your handling code here:
    }//GEN-LAST:event_jMenu9MouseClicked

    private void jMenu9ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenu9ActionPerformed
        // TODO add your handling code here:
    }//GEN-LAST:event_jMenu9ActionPerformed

    private void jMenuItem1MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_jMenuItem1MouseClicked
        IJ.setTool("freehand");  // TODO add your handling code here:        // TODO add your handling code here:
    }//GEN-LAST:event_jMenuItem1MouseClicked

    private void jMenuItem1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem1ActionPerformed
        IJ.setTool("freehand");  // TODO add your handling code here:          // TODO add your handling code here:
    }//GEN-LAST:event_jMenuItem1ActionPerformed

    private void jMenuItem2MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_jMenuItem2MouseClicked
        IJ.setTool("rectangle");// TODO add your handling code here:        // TODO add your handling code here:
    }//GEN-LAST:event_jMenuItem2MouseClicked

    private void jMenuItem2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jMenuItem2ActionPerformed
        IJ.setTool("rectangle");     // TODO add your handling code here:
    }//GEN-LAST:event_jMenuItem2ActionPerformed

    private void jMenu2MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_jMenu2MouseClicked
        // TODO add your handling code here:
    }//GEN-LAST:event_jMenu2MouseClicked

    private void txtfilenameActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_txtfilenameActionPerformed
        // TODO add your handling code here:
    }//GEN-LAST:event_txtfilenameActionPerformed

    /**
     * @param args the command line arguments
     */
    public static void main(String args[]) {
        /* Set the Nimbus look and feel */
        //<editor-fold defaultstate="collapsed" desc=" Look and feel setting code (optional) ">
        /* If Nimbus (introduced in Java SE 6) is not available, stay with the default look and feel.
         * For details see http://download.oracle.com/javase/tutorial/uiswing/lookandfeel/plaf.html 
         */
        try {
            for (javax.swing.UIManager.LookAndFeelInfo info : javax.swing.UIManager.getInstalledLookAndFeels()) {
                if ("Nimbus".equals(info.getName())) {
                    javax.swing.UIManager.setLookAndFeel(info.getClassName());
                    break;
                }
            }
        } catch (ClassNotFoundException ex) {
            java.util.logging.Logger.getLogger(classifyfromimage.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
        } catch (InstantiationException ex) {
            java.util.logging.Logger.getLogger(classifyfromimage.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
        } catch (IllegalAccessException ex) {
            java.util.logging.Logger.getLogger(classifyfromimage.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
        } catch (javax.swing.UnsupportedLookAndFeelException ex) {
            java.util.logging.Logger.getLogger(classifyfromimage.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
        }
        //</editor-fold>
        //</editor-fold>

        /* Create and display the form */
        /*java.awt.EventQueue.invokeLater(new Runnable() {
            public void run() {
                new classifyfromimage().setVisible(true);
            }
        });*/
    new classifyfromimage().setVisible(true);
    }
    

    // Variables declaration - do not modify//GEN-BEGIN:variables
    private javax.swing.JButton jButton1;
    private javax.swing.JButton jButton2;
    private javax.swing.JLabel jLabel1;
    private javax.swing.JLabel jLabel2;
    private javax.swing.JMenu jMenu2;
    private javax.swing.JMenu jMenu9;
    private javax.swing.JMenuBar jMenuBar1;
    private javax.swing.JMenuItem jMenuItem1;
    private javax.swing.JMenuItem jMenuItem2;
    private javax.swing.JMenuItem jMenuItem3;
    private javax.swing.JMenuItem jMenuItem4;
    private javax.swing.JMenuItem jMenuItem5;
    public static javax.swing.JTextField txtfilename;
    // End of variables declaration//GEN-END:variables
}