diff --git a/seed-via-docker.sh b/seed-via-docker.sh index 82accff..9bb1f8e 100755 --- a/seed-via-docker.sh +++ b/seed-via-docker.sh @@ -2,4 +2,4 @@ set -e -docker run -v $HOME/.gitconfig:/root/.gitconfig -v $PWD:/work -w /work --rm -ti obolibrary/odkfull /tools/odk.py seed "$@" +docker run -v $HOME/.gitconfig:/root/.gitconfig -v $PWD:/work -w /work --rm -ti obolibrary/odkfull:v1.2.27 /tools/odk.py seed "$@" diff --git a/src/ontology/make_uberon_imports.sh b/src/ontology/make_uberon_imports.sh index 85d57d0..75af314 100755 --- a/src/ontology/make_uberon_imports.sh +++ b/src/ontology/make_uberon_imports.sh @@ -64,5 +64,5 @@ docker run \ -v $PWD/../../:/work \ -w /work/src/ontology \ --rm -ti \ - obolibrary/odkfull \ + obolibrary/odkfull:v1.2.27 \ bash -c "cp uberon_filtered.owl imports/uberon_import.owl" diff --git a/src/ontology/reports/edges.tsv b/src/ontology/reports/edges.tsv index 4bdd29b..4df23ea 100644 --- a/src/ontology/reports/edges.tsv +++ b/src/ontology/reports/edges.tsv @@ -1,253 +1,255 @@ ?x ?p ?y - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid297 + + + + + - - + + + + - - - - - - - - + + + + + + + + + + + + + + + + + + + + - + + + + - - - - - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid274 - - - - - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid177 - - - - - - + - - - - - + + + + + + + + + + + + + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid297 + + + + + + + + + + + + + + + + + + + + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid292 + + + + + + + + + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid177 + + + + + + + + + + - - - - - - - - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid156 - - - - - - - - - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid303 + + - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid492 - - + + + + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid492 + + + + - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid161 - - - - + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid161 + + + + + + + + + + + - - - - - - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid292 - + + + - - - - - - + - - - - + + + + + + - - + + + + - - - - - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid172 - - - - - - + + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid274 + + + + + + + + + + - + + + - - - - - - - - - + + + + + + - - - - + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + - - - - - - - - + + + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid156 + + + + + + + + - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid172 + + + + - - - - - - - - - - - + + + + + + + + - - + + + + + + + + + + + + + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid303 + - - - - - - - - - - - - + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid199 + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid448 @@ -273,9 +275,8 @@ - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid206 + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid456 - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid280 @@ -299,14 +300,12 @@ - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid199 - + - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid448 @@ -322,8 +321,8 @@ - + @@ -333,11 +332,13 @@ + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid206 + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid286 @@ -408,14 +409,13 @@ - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid456 + _:B3d74e2f4X2D046aX2D4dd0X2Da16eX2D9796ce113907genid280 - _:B6fa465bfX2D996cX2D43d3X2D97a8X2Dc9814902fc57genid286 @@ -440,6 +440,6 @@ - + diff --git a/src/ontology/reports/synonyms.tsv b/src/ontology/reports/synonyms.tsv index 7c8cc57..c0e9cb7 100644 --- a/src/ontology/reports/synonyms.tsv +++ b/src/ontology/reports/synonyms.tsv @@ -123,10 +123,10 @@ "sensorimotor resting state functional connectivity matrix"@en "white matter volume measurement datum"@en "spoiled GRE sequence"@en - "V1 resting state network atlas"@en "ChaCo data set"@en - "sagittal"@en + "V1 resting state network atlas"@en "milliliter unit"@en + "sagittal"@en "antsRegistration"@en "field of view"@en "Proton density sequence"@en @@ -164,8 +164,8 @@ "lesion mask"@en "T1 MPRAGE sequence"@en "slice thickness"@en - "T1 GRE sequence"@en "brain connectivity measurement datum"@en + "T1 GRE sequence"@en "DeepGRAI analysis"@en "T2 weighted image data set"@en "Desikan-Killiany brain atlas image data set"@en diff --git a/src/ontology/run.bat b/src/ontology/run.bat index 0dbb303..d3e50ec 100644 --- a/src/ontology/run.bat +++ b/src/ontology/run.bat @@ -1 +1 @@ -docker run -v %cd%\..\..\:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='' -e JAVA_OPTS='' --rm -ti obolibrary/odkfull %* \ No newline at end of file +docker run -v %cd%\..\..\:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='' -e JAVA_OPTS='' --rm -ti obolibrary/odkfull:v1.2.27 %* diff --git a/src/ontology/run.sh b/src/ontology/run.sh index 0f1bbff..e59ce7b 100755 --- a/src/ontology/run.sh +++ b/src/ontology/run.sh @@ -9,4 +9,4 @@ # we therefore map the whole repo (../..) to a docker volume. # # See README-editors.md for more details. -docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx128G -XX:ActiveProcessorCount=64' -e JAVA_OPTS='' --rm -ti obolibrary/odkfull "$@" +docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx128G -XX:ActiveProcessorCount=64' -e JAVA_OPTS='' --rm -ti obolibrary/odkfull:v1.2.27 "$@"