Bug: No package called "sequenza"

[samarth8392]

Error:

Error in library(sequenza) : there is no package called ‘sequenza’

The issue is probably with the updated ccbr_wes_base:1.1.0 docker file. Even though the sequenza-utils was installed using pip3 but it seems like it was removed from CRAN (see) but they have a docker now.

The solution would be to use sequenza docker image instead of some archived sequenza version on R.

[dnousome]

Maybe we could change to pull from the github repo instead in the docker. Or create a separate image just for sequenza
Rscript -e 'remotes::install_github("ShixiangWang/copynumber"); remotes::install_github("cran/sequenza")' \      && Rscript -e 'remotes::install_version("iotools",version="0.3-2")'