From 3eff174aaed1b69c2708ed4190e825ef98ee30ff Mon Sep 17 00:00:00 2001 From: Amber Lim Date: Fri, 27 Sep 2024 16:15:05 -0500 Subject: [PATCH] Update sleap.def --- software/SLEAP/README.md | 4 ++-- software/SLEAP/sleap.def | 7 ++++--- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/software/SLEAP/README.md b/software/SLEAP/README.md index 63ff554..554ae25 100644 --- a/software/SLEAP/README.md +++ b/software/SLEAP/README.md @@ -31,6 +31,6 @@ Program overview: https://sleap.ai/index.html | *Type* | **Apptainer** | | | *OS* | Ubuntu | | | *Base image* | **condaforge/miniforge3:latest** | *DockerHub* | -| *Updated* | 2024-02-23 | *Andrew Owen* | -| *Last tested on HTC* | - | - | +| *Updated* | 2024-09-27 | *Amber Lim* | +| *Last tested on HTC* | 2024-09-23 | *Amber Lim* | | *Last tested on HPC* | - | - | diff --git a/software/SLEAP/sleap.def b/software/SLEAP/sleap.def index e992d1d..aa427b3 100644 --- a/software/SLEAP/sleap.def +++ b/software/SLEAP/sleap.def @@ -5,10 +5,11 @@ From: condaforge/miniforge3:latest # Install some shared library requirements export DEBIAN_FRONTEND=noninteractive apt update -y - apt install -y ffmpeg libsm6 libxext6 + apt install -y ffmpeg libsm6 libxext6 libc6 git - # Install Sleap - mamba create -y -n sleap -c conda-forge -c nvidia -c sleap -c anaconda sleap=1.3.3 + # Install Sleap from git + git clone https://github.com/talmolab/sleap && cd sleap + mamba env create -f environment.yml -n sleap # Activate environment when starting container cat << EOF > $APPTAINER_ENVIRONMENT