Reactome depicts reactions grouped with causal chains to form pathways. The database is moving to a graphDB (Neo4j) which will facilitate extraction and analysis of data (link). This will be useful for better extraction of causality statements from this knowledgebase.
- Reactome: a database of reactions, pathways and biological processes. Croft et al. (2011), NAR
- Reactome pathway analysis: a high-performance in-memory approach. Fabregat et al. (2017), BMC Bioinformatics
- H. sapiens
- D. melanogaster
- A. thaliana
- etc.
- UniProt
- ChEBI
- ENSEMBL
- miRBase
- NCBI
- MITAB
- Gene association file (GO annotation in Reactome)
- SBML
- Biopax
- SBGN