conf.json

{
    "factors": [
        "KRAS",
        "Patient_ID",
        "LRP1B_bin",
        "CSMD3_bin",
        "KMT2D_bin",
        "KMT2C_bin",
        "MUC16_bin",
        "TP53_bin",
        "STK11_bin",
        "NF1_bin",
        "n_stadium_bin",
        "mut_load_all_cutoff_75_ci",
        "mut_load_nsyn_cutoff_75_ci",
        "mut_load_syn_cutoff_75_ci",
        "mut_load_all_cutoff",
        "mut_load_nsyn_cutoff",
        "mut_load_syn_cutoff",
        "type_CD45_ME_2",
        "T_stadium",
        "distance_to_tumor",
        "Nstadium",
        "stage",
        "stage_2",
        "status_out_20190329",
        "age",
        "stage_code",
        "OS_days_20190329",
        "gender",
        "status_5_years_trunk_20190329",
        "smoke",
        "OS_days_5_years_trunk_20190329",
        "recidiv_Annette_statistik",
        "days_to_recurrence_or_last_checkup"
    ],
    "biomarkers": [
        "Tim3",
        "B7H3",
        "IDO1",
        "STING",
        "GITR",
        "OX40L",
        "VISTA",
        "ARG1",
        "LAG3",
        "41BB",
        "CD45RO",
        "CD34",
        "CD14",
        "CD66b",
        "FOXP3",
        "FAPalpha",
        "CD163",
        "CD27",
        "ICOS",
        "CD25",
        "PDL2",
        "CD127",
        "CD80",
        "CD40",
        "CD44",
        "CD11c",
        "CD8",
        "CD3",
        "Ki67",
        "SMA",
        "CD20",
        "Fibronectin",
        "PD1",
        "PanCk",
        "PDL1",
        "CD4",
        "CD68",
        "HLADR",
        "CD45",
        "CD56",
        "CTLA4",
        "GZMB"
    ],
    "controls": [
        "None"
    ],
    "patient_id": "Patient_ID",
    "encode_factors": true,
    "transform_biomarkers": true,
    "encoding": "utf-8"
}