Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Regression for Ptychostomum pseudotriquetrum (Hedw.) J.R.Spence & H.P.Ramsay ex Holyoak & N.Pedersen #736

Closed
ManonGros opened this issue Oct 30, 2024 · 3 comments
Assignees
Labels
feedback User feedback matching Name matching issue xrelease extended release

Comments

@ManonGros
Copy link

{
  "count": 2075,
  "verbatim_taxonID": "null",
  "verbatim_taxonConceptID": "null",
  "verbatim_scientificNameID": "null",
  "verbatim_kingdom": "null",
  "verbatim_phylum": "null",
  "verbatim_class": "null",
  "verbatim_order": "null",
  "verbatim_family": "null",
  "verbatim_genus": "null",
  "verbatim_species": "null",
  "verbatim_infra": "null",
  "verbatim_rank": "null",
  "verbatim_verbatimRank": "null",
  "verbatim_scientificName": "Ptychostomum pseudotriquetrum",
  "verbatim_generic": "null",
  "verbatim_author": "(Hedw.) J.R.Spence & H.P.Ramsay ex Holyoak & N.Pedersen",
  "current_kingdom": "Plantae",
  "current_phylum": "Bryophyta",
  "current_class": "Bryopsida",
  "current_order": "Bryales",
  "current_family": "Bryaceae",
  "current_genus": "Ptychostomum",
  "current_subGenus": "null",
  "current_species": "Ptychostomum pseudotriquetrum",
  "current_scientificName": "Ptychostomum pseudotriquetrum (Hedw.) J.R.Spence & H.P.Ramsay ex Holyoak & N.Pedersen",
  "current_acceptedScientificName": "Ptychostomum pseudotriquetrum (Hedw.) J.R.Spence & H.P.Ramsay ex Holyoak & N.Pedersen",
  "proposed_kingdom": "incertae sedis",
  "proposed_phylum": "null",
  "proposed_class": "null",
  "proposed_order": "null",
  "proposed_family": "null",
  "proposed_genus": "null",
  "proposed_subGenus": "null",
  "proposed_species": "null",
  "proposed_scientificName": "incertae sedis",
  "proposed_acceptedScientificName": "null",
  "debug_url": "http://backbonebuild-vh.gbif.org:9101/v2/species/match?&scientificName=Ptychostomum pseudotriquetrum&authorship=(Hedw.) J.R.Spence & H.P.Ramsay ex Holyoak & N.Pedersen&strict=false",
  "_key": 141,
  "changes": {
    "kingdom": true,
    "phylum": true,
    "class": true,
    "order": true,
    "family": true,
    "genus": true,
    "species": true,
    "scientificName": true,
    "acceptedScientificName": true
  },
  "reviewed": false
}

It looks like there are more than one accepted species there: https://www.checklistbank.org/dataset/304862/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nomCode&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&facet=sectorMode&facet=secondarySourceGroup&facet=sectorDatasetKey&facet=group&limit=50&offset=0&q=Ptychostomum%20pseudotriquetrum&sortBy=taxonomic

@ManonGros ManonGros added feedback User feedback xrelease extended release labels Oct 30, 2024
@camiplata camiplata added the matching Name matching issue label Oct 31, 2024
@camiplata
Copy link
Contributor

Matching problem because of duplicate names

  1. Plazi issue reported: wrong classification appears as chromista should be Plantae > Bryophyta plazi/community#335
  2. Duplicate shouldn't exist, the accepted from the base release is the only name that should be maintained given the priorities
Captura de pantalla 2024-10-30 a la(s) 10 41 30 p m

@camiplata camiplata added this to the XRelease Public milestone Nov 6, 2024
@camiplata
Copy link
Contributor

The main issue has been resolve but we still need to deal with the duplicated name on the xrelease,

@mdoering
Copy link
Member

mdoering commented Feb 4, 2025

There are still 4 more Plazi datasets with the genus wrongly placed in Chromista. Hence the XR still has them as a duplicate - but marked as provisionally accepted, so the matching should prefer the good one.

https://www.checklistbank.org/nameusage/search?publisherKey=7ce8aef0-9e92-11dc-8738-b8a03c50a862&rank=genus&q=Ptychostomum

The species matches fine. A variety is not matched to the species because the species appears to be a total mess and is listed with pages of synonyms and even 50 UNITE hypothesis. It seems though we are representing it as good as we can right now! https://www.checklistbank.org/dataset/307951/taxon/BVBGM

Image

@mdoering mdoering closed this as completed Feb 4, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
feedback User feedback matching Name matching issue xrelease extended release
Projects
None yet
Development

No branches or pull requests

3 participants