Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

FormatConverter fails if run in headless mode #303

Open
CellDynamics opened this issue Feb 28, 2019 · 0 comments
Open

FormatConverter fails if run in headless mode #303

CellDynamics opened this issue Feb 28, 2019 · 0 comments

Comments

@CellDynamics
Copy link
Owner

This macro:

run("Format converter", "opts={status:[],areMultipleFiles:true,paramFile:(C:/Users/Documents/test/160617-Lifeact-mRFP-3.QCONF)}");

fails if run in headless mode:

C:\Users\Apps\Fiji.app\ImageJ-win64.exe --headless --console -macro .\test\test.ijm

with error:

Java HotSpot(TM) 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
java.awt.HeadlessException
        at java.awt.GraphicsEnvironment.checkHeadless(GraphicsEnvironment.java:204)
        at java.awt.Window.<init>(Window.java:536)
        at java.awt.Frame.<init>(Frame.java:420)
        at java.awt.Frame.<init>(Frame.java:385)
        at javax.swing.SwingUtilities$SharedOwnerFrame.<init>(SwingUtilities.java:1763)
        at javax.swing.SwingUtilities.getSharedOwnerFrame(SwingUtilities.java:1838)
        at javax.swing.JDialog.<init>(JDialog.java:272)
        at javax.swing.JDialog.<init>(JDialog.java:206)
        at javax.swing.JDialog.<init>(JDialog.java:154)
        at com.github.celldynamics.quimp.filesystem.converter.FormatConverterUi.<init>(FormatConverterUi.java:143)
        at com.github.celldynamics.quimp.filesystem.converter.FormatConverterController.<init>(FormatConverterController.java:55)
        at Format_ConverterRunner.<init>(Format_ConverterRunner.java:9)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
        at java.lang.Class.newInstance(Class.java:442)
        at ij.IJ.runUserPlugIn(IJ.java:226)
        at ij.IJ.runPlugIn(IJ.java:192)
        at ij.Executer.runCommand(Executer.java:137)
        at ij.Executer.run(Executer.java:66)
        at ij.IJ.run(IJ.java:308)
        at ij.macro.Functions.doRun(Functions.java:624)
        at ij.macro.Functions.doFunction(Functions.java:97)
        at ij.macro.Interpreter.doStatement(Interpreter.java:250)
        at ij.macro.Interpreter.doStatements(Interpreter.java:236)
        at ij.macro.Interpreter.run(Interpreter.java:119)
        at ij.macro.Interpreter.run(Interpreter.java:90)
        at ij.macro.Interpreter.run(Interpreter.java:101)
        at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:161)
        at ij.plugin.Macro_Runner.runMacroFile(Macro_Runner.java:145)
        at ij.IJ.runMacroFile(IJ.java:159)
        at net.imagej.legacy.IJ1Helper$4.call(IJ1Helper.java:1124)
        at net.imagej.legacy.IJ1Helper$4.call(IJ1Helper.java:1120)
        at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.java:1054)
        at net.imagej.legacy.IJ1Helper.runMacroFile(IJ1Helper.java:1120)
        at net.imagej.legacy.LegacyCommandline$Macro.handle(LegacyCommandline.java:187)
        at org.scijava.console.DefaultConsoleService.processArgs(DefaultConsoleService.java:102)
        at org.scijava.AbstractGateway.launch(AbstractGateway.java:97)
        at net.imagej.Main.main(Main.java:55)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:279)
        at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:186)
        at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:77)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant