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getStackFromPixels.m
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getStackFromPixels.m
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function imgStack = getStackFromPixels(pixels, theC, theT)
% Copyright (C) 2013-2014 University of Dundee & Open Microscopy Environment.
% All rights reserved.
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License along
% with this program; if not, write to the Free Software Foundation, Inc.,
% 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
global session;
try
numZ = pixels.get(0).getSizeZ.getValue;
pixelsId = pixels.get(0).getId.getValue;
sizeX = pixels.get(0).getSizeX.getValue;
sizeY = pixels.get(0).getSizeY.getValue;
catch
numZ = pixels.getSizeZ.getValue;
pixelsId = pixels.getId.getValue;
sizeX = pixels.getSizeX.getValue;
sizeY = pixels.getSizeY.getValue;
end
imgStack = zeros(sizeY, sizeX, numZ);
for thisZ = 1:numZ
imgStack(:,:,thisZ) = getPlane(session, imageId, thisZ-1, theC, theT);
end