DESCRIPTION

Package: CREscendo
Type: Package
Title: CREscendo: Identifying cell-type specific activities of cis-regulatory elements from scATAC-seq data
Version: 0.1.1
Author: Mengjie Chen
Maintainer: Mengjie Chen <mengjiechen@uchicago.edu>
Description: CREscendo is designed to analyze differential usage of CREs by examining differences in Tn5 cleavage frequencies across cell types. This approach helps to recover regulatory signals that peak-based analyses often overlook.
License: GPL (>=2)
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 3.6.0),
    Seurat,
    stringi,
    ggplot2,
    Rsamtools, 
    Signac,
    GenomicRanges,
    tidyr
Imports:
    reshape2,
    patchwork, 
    dplyr,
    viridis,
    ChIPseeker,
    corrplot
RoxygenNote: 7.3.1