From dca0c09da51f7e66a69a2e0d13aab200198cb29f Mon Sep 17 00:00:00 2001 From: ChocoParrot Date: Mon, 13 Sep 2021 08:18:45 +0800 Subject: [PATCH] [refactor] banner --- README.md | 11 +++++++++++ images/ORFFinder.png | Bin 0 -> 21776 bytes 2 files changed, 11 insertions(+) create mode 100644 images/ORFFinder.png diff --git a/README.md b/README.md index ad2696b..6c4e9e2 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,11 @@ +
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+ # ORFFinder ORFFinder in Python. Inspired by NCBI's version: https://www.ncbi.nlm.nih.gov/orffinder/ @@ -58,3 +66,6 @@ stop_codons: recognised 3-base pair condons for termination. Default: ["TAA", "T remove_nested: remove all ORFs completely encased in another. Default: False trim_trailing: remove ORFs are the edge of the sequence that do not have a defined stop codon. Default: False ``` + +### Dependencies +Biopython (https://biopython.org/) diff --git a/images/ORFFinder.png b/images/ORFFinder.png new file mode 100644 index 0000000000000000000000000000000000000000..82779bd1650589d1e0f0dcc4f92a1f804a1fea67 GIT binary patch literal 21776 zcma*PcRbho|3CbejI1ajkyW&;vZBatP>PV0nd}usMr0)`Eka2Y8KF{??A4L1tV(u9 z3fVG#_h;wxy{^yqx~@O2b34a5r}XxIJ)e)~<8fclcc{)$O=bpe1`373eCVLs2?}ME z82)>Ro)%wgES*d!6sjN_RaKoss;d0Xu1;1q_U9;+ZP7l_3J1$|*n?M|TwiO%Gs@q4 zBWc83S+C-FhE56IY5x;(>!uqi`Em@;Xz2LDPSSCnKf`NGqdZR4`~7>$kl@w_ z@$5zw9zCu~%U&yq7wV}3FWGVH3MnE?s$+6Ze9Pl{NJIJ+sdhn<|>)UzK_$%9UMze%SlyKC2V{6;Z|p`+WP1 zolkY&W7~5-P9%~wEJ#NGbL>9+C%j2oj)emtF!=Xyu_N52x&z|@^{&zd)@ ztO_%{x|)q4eOnUKCP{hs6T4D|6o2*cxh<_LV0XP!Qj_b)AXW2>&zrW`%WgnKq%cJ% zfp)T2j<5Vcn^;5I-jB1neNspLy7xFge!X}{USjgl<*di*QGP`Z-Mw!fZ}%!0V38QN zta&neSoyPx;@ZN*#@OcvRzw@#exJ_rjB2Li*M4{S8-*^UlaHlO9r&Tp@;bV>c0 zrDpSU^{b3(NW;F+njg_r!@u#@yz1L4_}3cegQqS~C}Kk7A1aT>N*D2qbZ&>V)#(P- zFjH6r6)R>8@Jk!r)D7KKog5s_Il56)UC)`howMY>WaDPduX#vY$H1S3lS1LA98y!( z^Y}d4>1iA>yrMMTw)f}o%SOq2db?W>s_#irKlOa;R1)ikCM%OiyE^d5@_%?+*pPeiV)UP#i4kn$3I8 z6>N5ZULcUQX?4z1dh#DC{*2@+J&hRonp6^muL6OqILTL52IK$tw+OK3|9^bTHs}9( zmH+t`o$mjBmH&Lpe}2S&UgbaE@}GC{zrW=_@8W-d%m03({hOkn2&TRJ=byv<-@jk2 z9}K88SJu{Mc6D_%cQVn@@q6@0FsH*lEh9r!L*vQFo?x>Z@$q55f4k-w?n+BfS2=t3 zY^L|dU}axl#lwdWQz$!j?9kEEOJUTY7f9)N$Q_e?7qQJyR#5)?nMto#lyFmP5nCnJ6VQKfg>gA5%)Yva)RMka+K2=5L zoSau??j7JS$uP*iar5RX8yg#TcJ^yN#!ThiKfk;_c<2xn1&{oHziJx?&z}{}&Ujg; z9QPmkmgmoh<%xz>rvKB|ypk<8c4e&3E;8dy;hKLp)pup-Qi7bzDyDKBGqRcN`BF!* z05@*kQgv~WTt!ViF*jkcgZ*zM#8ka6D_a#nx0aT&I8n{lUgV>|z{vR2^xyj6PJHF? z#r#{L=iKt2u~G@9qX}~U&8f$9Z?Tbj@ITTg#7b}K=omTNoT_SM#O>+n+5X0T=h=6c z)q_;=3Oe0Qb2T+JC6$#lN=sAgDcwEgA@pn3D66Zh-=BO|SHsV(u7s?lseT?5;WHvK1Gt74uNJ&Yty`P8;>U?|Ysp-G#S`@+O zJ4f~H+qYPSOJZ20+)HC;4Gj$+niTuyeGIF!NReiSU?-2D9UI<%D= z8X>`|SA?pns>Ww#f)f&Wu3x{-x^CT7rIp1Ot@EF(1Qm|k^!4_#vawN}J9jSg%v+A6 zq@>vWUNTm7aY0LeW-SK(xkK@zreo>;_RhQBem z_$&WpmIPA(9y00SLyEAlu=B->%b9zxmG_jCmQvyW=l+ZpyZmSseRB*3*0#1+&A8MwG-`{^gS($3T*G%TCwPDwf6}vOk!X6@AF1@d+JF8j6E9v|WnyBYr>}2b z6~1w(HEYuuxxWYdrCzc|L|NdP^|qbG1E*&~wr|^35-p@D;nG`?{_tGK^K-G%b{v-H z&J90eQ=zwUOM5!BQ-X!5oVux)dSxhGOf8)EE^41& zxpdmBdd6nEKd-{Y?uyX$rn!b(@^0G--@P+CcW$ej7}vl3Ls$bHxvx5^I%F-Msg;%R z#jJyE&(7pp)p7GETx6m=OiQC@W{#+DLLV?4YDj8mZ1hKGbaQvFR1}kmXFhV|NX`5A z{*~q@zkJojalLkpKGV2hozu5M(p|rP{VL(yU1C%}dIU%IlPrgB{Kk(5Hw2rd>jyn^ zxDc7^|5fQOioSQ&d zD?2+&jE;_$Sn0}&sKf;n7VfL4sObLZ&dz+7K3X{*791xDk8#tfpI>4YvX&AnD%6sa zg{P;cZp6kO)K!r(|D^Xx1!bhBuHJ(Uj@^BZfy@AGId?O*O6Bn3>kN@Mg!vT|HeoJQ zRfcgEdmPM0@%#Gv8Wy;2oi-6-&%g1+-QtLr)@llA49ETou8ktsjE{*sp4GeoISf-zxI^T8(Za%ty!m4wY4Kw)pPX!9;h{0ExPjR!r;+x zKBdj?E>Axy6U57lpR=;+{cvxO&WRIcX~&Zr(obg4Dm{tfQ|iUJqxhjgo{X?h5503| z1C3b30W&j!<+;AKSfV~u{k4dQ4R#9D)YR=?zLbCZ#2y?ROuAad)l@vL1xm`?seHgS z>G9(roJ|!?O*$hZqlVVj;8(9MwiG{p{P@RGzOBXAe3xt2uBAzG+1D)XVG?qsGT0my zBJ1=G(;g_G<;byPA&H56FJHbiwXx~gwu)0)TKYr0>{<+3!RF^3_OWqsO+oetPMta> z=d&OsHGL zY(ln+-k7RG-`*)~V7K8&s|vcI!7n64jo~7Pqbu9hhVwWv(z26B-tAz2{AJaApFc8H zk-T9TzN#iBiA6l-*b`c^?6A!v

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