diff --git a/src/cline_tools/help_pages/orffinder-to-gff3.txt b/src/cline_tools/help_pages/orffinder-to-gff3.txt index 045b52c..0c49699 100644 --- a/src/cline_tools/help_pages/orffinder-to-gff3.txt +++ b/src/cline_tools/help_pages/orffinder-to-gff3.txt @@ -4,7 +4,7 @@ USAGE [-attr_name string] DESCRIPTION - ORFFinder Python v1.5 + ORFFinder Python v1.6 PARAMETERS [-h] diff --git a/src/cline_tools/help_pages/orffinder-to-gtf.txt b/src/cline_tools/help_pages/orffinder-to-gtf.txt index 597303b..b5db616 100644 --- a/src/cline_tools/help_pages/orffinder-to-gtf.txt +++ b/src/cline_tools/help_pages/orffinder-to-gtf.txt @@ -4,7 +4,7 @@ USAGE [-attr_name string] DESCRIPTION - ORFFinder Python v1.5 + ORFFinder Python v1.6 PARAMETERS [-h] diff --git a/src/cline_tools/help_pages/orffinder-to-sequence.txt b/src/cline_tools/help_pages/orffinder-to-sequence.txt index 310af0f..81a4eea 100644 --- a/src/cline_tools/help_pages/orffinder-to-sequence.txt +++ b/src/cline_tools/help_pages/orffinder-to-sequence.txt @@ -4,7 +4,7 @@ USAGE [-attr_name string] [-outtype protein/nucleotide] DESCRIPTION - ORFFinder Python v1.5 + ORFFinder Python v1.6 PARAMETERS [-h] diff --git a/src/cline_tools/orffinder-to-gff3 b/src/cline_tools/orffinder-to-gff3 index 821d846..fbc4849 100644 --- a/src/cline_tools/orffinder-to-gff3 +++ b/src/cline_tools/orffinder-to-gff3 @@ -60,4 +60,4 @@ try: open(classed_arguments["out"], "w+").write(full_output) except: - print("USAGE\n orffinder-to-gff3 [-in input] [-infmt format] [-out output] [-orf_size int]\n [-remove_nested boolean] [-trim_trailing boolean] [-max_orfs_per_sequence int]\n [-attr_name string]\n\nDESCRIPTION\n ORFFinder Python v1.5\n\nUse '-help' to print detailed descriptions of command line arguments\n========================================================================") + print("USAGE\n orffinder-to-gff3 [-in input] [-infmt format] [-out output] [-orf_size int]\n [-remove_nested boolean] [-trim_trailing boolean] [-max_orfs_per_sequence int]\n [-attr_name string]\n\nDESCRIPTION\n ORFFinder Python v1.6\n\nUse '-help' to print detailed descriptions of command line arguments\n========================================================================") diff --git a/src/cline_tools/orffinder-to-gtf b/src/cline_tools/orffinder-to-gtf index 1188846..2decc95 100644 --- a/src/cline_tools/orffinder-to-gtf +++ b/src/cline_tools/orffinder-to-gtf @@ -60,4 +60,4 @@ try: open(classed_arguments["out"], "w+").write(full_output) except: - print("USAGE\n orffinder-to-gtf [-in input] [-infmt format] [-out output] [-orf_size int]\n [-remove_nested boolean] [-trim_trailing boolean] [-max_orfs_per_sequence int]\n [-attr_name string]\n\nDESCRIPTION\n ORFFinder Python v1.5\n\nUse '-help' to print detailed descriptions of command line arguments\n========================================================================") + print("USAGE\n orffinder-to-gtf [-in input] [-infmt format] [-out output] [-orf_size int]\n [-remove_nested boolean] [-trim_trailing boolean] [-max_orfs_per_sequence int]\n [-attr_name string]\n\nDESCRIPTION\n ORFFinder Python v1.6\n\nUse '-help' to print detailed descriptions of command line arguments\n========================================================================") diff --git a/src/cline_tools/orffinder-to-sequence b/src/cline_tools/orffinder-to-sequence index 20921da..2521ba1 100644 --- a/src/cline_tools/orffinder-to-sequence +++ b/src/cline_tools/orffinder-to-sequence @@ -65,4 +65,4 @@ try: SeqIO.write(output, classed_arguments["out"], classed_arguments["outfmt"]) except: - print("USAGE\n orffinder-to-sequence [-in input] [-infmt format] [-out output] [-outfmt format] [-orf_size int]\n [-remove_nested boolean] [-trim_trailing boolean] [-max_orfs_per_sequence int]\n [-attr_name string] [-outtype protein/nucleotide]\n\nDESCRIPTION\n ORFFinder Python v1.5\n\nUse '-help' to print detailed descriptions of command line arguments\n========================================================================") + print("USAGE\n orffinder-to-sequence [-in input] [-infmt format] [-out output] [-outfmt format] [-orf_size int]\n [-remove_nested boolean] [-trim_trailing boolean] [-max_orfs_per_sequence int]\n [-attr_name string] [-outtype protein/nucleotide]\n\nDESCRIPTION\n ORFFinder Python v1.6\n\nUse '-help' to print detailed descriptions of command line arguments\n========================================================================")