You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I installed the UI on a Linux VirtualBox, but when I ran "clearmap-ui", it started to load then I got this long error:
Warning: Ignoring XDG_SESSION_TYPE=wayland on Gnome. Use QT_QPA_PLATFORM=wayland to run on Wayland anyway.
Traceback (most recent call last):
File "messagestream.pyx", line 91, in scipy._lib.messagestream.MessageStream.close
OSError: [Errno 26] Text file busy: b'/media/sf_Rat_Brain_Slabs/TempTutorial/scipy-jueicqb_'
Exception ignored in: 'scipy._lib.messagestream.MessageStream.__dealloc__'
Traceback (most recent call last):
File "messagestream.pyx", line 91, in scipy._lib.messagestream.MessageStream.close
OSError: [Errno 26] Text file busy: b'/media/sf_Rat_Brain_Slabs/TempTutorial/scipy-jueicqb_'
Traceback (most recent call last):
File "/home/user/anaconda3/envs/ClearMapUi39/bin/clearmap-ui", line 33, in <module>
sys.exit(load_entry_point('ClearMap2==2.1.0', 'gui_scripts', 'clearmap-ui')())
File "/home/user/anaconda3/envs/ClearMapUi39/bin/clearmap-ui", line 25, in importlib_load_entry_point
return next(matches).load()
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/importlib/metadata.py", line 86, in load
module = import_module(match.group('module'))
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/ClearMap2-2.1.0-py3.9-linux-x86_64.egg/ClearMap/gui/run_gui.py", line 89, in <module>
from ClearMap.gui.widgets import OrthoViewer, ProgressWatcher, setup_mini_brain, StructureSelector, \
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/ClearMap2-2.1.0-py3.9-linux-x86_64.egg/ClearMap/gui/widgets.py", line 22, in <module>
from skimage import transform as sk_transform # WARNING: Slowish import, should be replaced
File "<frozen importlib._bootstrap>", line 1055, in _handle_fromlist
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/skimage/_shared/lazy.py", line 62, in __getattr__
return importlib.import_module(f'{package_name}.{name}')
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/skimage/transform/__init__.py", line 4, in <module>
from .radon_transform import (radon, iradon, iradon_sart,
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/skimage/transform/radon_transform.py", line 6, in <module>
from ._warps import warp
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/skimage/transform/_warps.py", line 9, in <module>
from ..measure import block_reduce
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/skimage/measure/__init__.py", line 6, in <module>
from ._polygon import approximate_polygon, subdivide_polygon
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/skimage/measure/_polygon.py", line 2, in <module>
from scipy import signal
File "<frozen importlib._bootstrap>", line 1055, in _handle_fromlist
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/scipy/__init__.py", line 134, in __getattr__
return _importlib.import_module(f'scipy.{name}')
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/scipy/signal/__init__.py", line 338, in <module>
from ._peak_finding import *
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/scipy/signal/_peak_finding.py", line 8, in <module>
from scipy.stats import scoreatpercentile
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/scipy/stats/__init__.py", line 623, in <module>
from ._rvs_sampling import rvs_ratio_uniforms
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/scipy/stats/_rvs_sampling.py", line 2, in <module>
from scipy.stats.sampling import RatioUniforms
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/scipy/stats/sampling.py", line 59, in <module>
from ._sampling import FastGeneratorInversion, RatioUniforms # noqa: F401
File "/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/scipy/stats/_sampling.py", line 8, in <module>
from ._unuran.unuran_wrapper import NumericalInversePolynomial
File "unuran_wrapper.pyx", line 188, in init scipy.stats._unuran.unuran_wrapper
File "unuran_wrapper.pyx", line 167, in scipy.stats._unuran.unuran_wrapper._setup_unuran
File "messagestream.pyx", line 33, in scipy._lib.messagestream.MessageStream.__cinit__
OSError: [Errno 26] Text file busy: b'/media/sf_Rat_Brain_Slabs/TempTutorial/scipy-jueicqb_'
/home/user/anaconda3/envs/ClearMapUi39/lib/python3.9/site-packages/torch/distributed/distributed_c10d.py:181: UserWarning: torch.distributed.reduce_op is deprecated, please use torch.distributed.ReduceOp instead
warnings.warn(
free(): invalid pointer
Aborted (core dumped)
I managed to run the UI on a previous virtual machine but I moved to a new one to increase the RAM directed at the VM, since the program kept crashing on the old one. I feel like I followed all the same steps so I'm not sure why it broke this time. Any help us appreciated, thanks.
The text was updated successfully, but these errors were encountered:
Hello,
I installed the UI on a Linux VirtualBox, but when I ran "clearmap-ui", it started to load then I got this long error:
I managed to run the UI on a previous virtual machine but I moved to a new one to increase the RAM directed at the VM, since the program kept crashing on the old one. I feel like I followed all the same steps so I'm not sure why it broke this time. Any help us appreciated, thanks.
The text was updated successfully, but these errors were encountered: