From 4607748c3b61c9ef231539b1a8c7a94ec5882b9b Mon Sep 17 00:00:00 2001 From: Vadym Date: Mon, 7 Aug 2023 09:05:24 +0200 Subject: [PATCH 1/2] Fix --- BALSAMIC/snakemake_rules/annotation/vep.rule | 1 - 1 file changed, 1 deletion(-) diff --git a/BALSAMIC/snakemake_rules/annotation/vep.rule b/BALSAMIC/snakemake_rules/annotation/vep.rule index ccc2d6bf6..c5a29d74a 100644 --- a/BALSAMIC/snakemake_rules/annotation/vep.rule +++ b/BALSAMIC/snakemake_rules/annotation/vep.rule @@ -223,7 +223,6 @@ fi tabix -p vcf -f {output.vcf_sv_clinical}; rm {input.vcf_sv_clinical_obs}; -rm {params.vcf_somatic_obs}; """ From a7dbda05f629d6577c5947de739f5c4906eae742 Mon Sep 17 00:00:00 2001 From: Vadym Date: Mon, 7 Aug 2023 09:08:01 +0200 Subject: [PATCH 2/2] CHANGELOG --- CHANGELOG.rst | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 38dcd2cfb..63c0472f8 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -26,6 +26,7 @@ Fixed: * Link external fastqs to case folder & create case directory https://github.com/Clinical-Genomics/BALSAMIC/pull/1195 * vcf2cytosure container missing constants https://github.com/Clinical-Genomics/BALSAMIC/pull/1198 * Bash commands in vep_somatic_clinical_snv https://github.com/Clinical-Genomics/BALSAMIC/pull/1200 +* Fix SVDB annotation intermediate rule https://github.com/Clinical-Genomics/BALSAMIC/pull/1218 Removed: ^^^^^^^