diff --git a/.cspell.json b/.cspell.json index f564c2f..f9e25bc 100644 --- a/.cspell.json +++ b/.cspell.json @@ -29,8 +29,8 @@ ".pre-commit-config.yaml", ".prettierignore", ".readthedocs.yml", + ".taplo.toml", ".vscode/*", - ".vscode/.gitignore", "codecov.yml", "docs/conf.py", "pyproject.toml" diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ed094dd..5d85231 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -39,6 +39,8 @@ jobs: coverage-target: ampform_dpd macos-python-version: "3.9" specific-pip-packages: ${{ inputs.specific-pip-packages }} + secrets: + CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} style: if: inputs.specific-pip-packages == '' secrets: diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1c1c69b..c6f34d2 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -13,7 +13,7 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.5.8 + rev: 0.5.15 hooks: - id: check-dev-files args: @@ -53,7 +53,7 @@ repos: metadata.vscode - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.8.4 + rev: v0.9.1 hooks: - id: ruff args: [--fix] @@ -125,6 +125,6 @@ repos: - id: pyright - repo: https://github.com/astral-sh/uv-pre-commit - rev: 0.5.11 + rev: 0.5.18 hooks: - id: uv-lock diff --git a/.readthedocs.yml b/.readthedocs.yml index 5bf7225..52dd314 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -13,9 +13,11 @@ build: export UV_LINK_MODE=copy uv run \ --group doc \ - --locked \ --no-dev \ --with tox \ tox -e doc mkdir -p $READTHEDOCS_OUTPUT mv docs/_build/html $READTHEDOCS_OUTPUT + +sphinx: + configuration: docs/conf.py diff --git a/.taplo.toml b/.taplo.toml index 0db1df7..71fcb1b 100644 --- a/.taplo.toml +++ b/.taplo.toml @@ -10,3 +10,10 @@ compact_inline_tables = true indent_string = " " reorder_arrays = true reorder_keys = true + +[[rule]] +include = ["**/pyproject.toml"] +keys = ["tool.tox"] + +[rule.formatting] +reorder_arrays = false diff --git a/codecov.yml b/codecov.yml index 0a09ab6..3dba52a 100644 --- a/codecov.yml +++ b/codecov.yml @@ -9,32 +9,22 @@ coverage: status: project: default: - # basic - target: 50% # can't go below this percentage - threshold: 1% # allow drops by this percentage + target: 58% + threshold: 1% base: auto - # advanced - branches: [] if_no_uploads: error if_not_found: success if_ci_failed: error only_pulls: false - flags: [] - paths: [] patch: default: - # basic target: 0 - threshold: 5% + threshold: 0% base: auto - # advanced - branches: null if_no_uploads: error if_not_found: success if_ci_failed: error only_pulls: false - flags: null - paths: null changes: false parsers: diff --git a/pyproject.toml b/pyproject.toml index 1db0f98..3a03f6a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -351,123 +351,133 @@ sort_first = [ "project", "tool.setuptools", "tool.setuptools_scm", + "tool.tox.env_run_base", ] spaces_indent_inline_array = 4 trailing_comma_inline_array = true [tool.tox] -legacy_tox_ini = """ -[tox] -envlist = - cov, - docnb-force, - linkcheck, - sty, -skip_install = True -skip_missing_interpreters = True -skipsdist = True - -[testenv] -allowlist_externals = - pytest -commands = - pytest {posargs} -description = Run all unit tests -passenv = * - -[testenv:cov] -allowlist_externals = - pytest -commands = - pytest {posargs:src tests} \ - --cov-fail-under=50 \ - --cov-report=html \ - --cov-report=xml \ - --cov=ampform_dpd -description = Compute test coverage - -[testenv:doc] -allowlist_externals = - sphinx-build -commands = - sphinx-build \ - --builder=html \ - --fail-on-warning \ - --keep-going \ - docs/ docs/_build/html -description = Build documentation with Sphinx - -[testenv:docnb] -base = doc -description = {[testenv:doc]description} with cached notebook execution -setenv = - {[testenv:doc]setenv} - EXECUTE_NB = yes - -[testenv:docnb-force] -base = doc -description = {[testenv:doc]description} with notebook execution (no cache) -setenv = - {[testenv:doc]setenv} - FORCE_EXECUTE_NB = yes - -[testenv:doclive] -allowlist_externals = - sphinx-autobuild -commands = - sphinx-autobuild \ - --ignore=docs/_build/ \ - --ignore=docs/_images/ \ - --ignore=docs/api/ \ - --ignore=docs/export/ \ - --open-browser \ - --port=0 \ - --re-ignore='.*/__pycache__/.*' \ - --re-ignore='.*/.ipynb_checkpoints/.*' \ - --re-ignore='.*/.virtual_documents/.*' \ - --re-ignore='.*\\.pdf' \ - --re-ignore='.*\\.pkl' \ - --re-ignore='.*\\.png' \ - --re-ignore='.*\\.svg' \ - --re-ignore='.*\\.tmp' \ - --watch=docs \ - --watch=src \ - docs/ docs/_build/html -description = Set up a server to directly preview changes to the HTML pages - -[testenv:docnblive] -base = doclive -description = {[testenv:doclive]description} with cached notebook execution -setenv = - {[testenv:doclive]setenv} - EXECUTE_NB = yes - -[testenv:linkcheck] -allowlist_externals = - sphinx-build -commands = - sphinx-build \ - --builder=linkcheck \ - --show-traceback \ - docs/ docs/_build/linkcheck -description = Check external links in the documentation (requires internet connection) -setenv = - PYTHONWARNINGS = - -[testenv:nb] -allowlist_externals = - pytest -commands = - pytest --nbmake --nbmake-timeout=3600 {posargs:docs} -description = Run all notebooks with pytest - -[testenv:sty] -allowlist_externals = - pre-commit -commands = - pre-commit run --all-files {posargs} -description = Perform all linting, formatting, and spelling checks -""" +env_list = [ + "cov", + "docnb-force", + "linkcheck", + "sty", +] +no_package = true +requires = ["tox>=4.21.0"] +skip_install = true +skip_missing_interpreters = true + +[tool.tox.env_run_base] +allowlist_externals = ["pytest"] +commands = [["pytest", {replace = "posargs", extend = true}]] +description = "Run all unit tests" +pass_env = ["*"] + +[tool.tox.env.cov] +allowlist_externals = ["pytest"] +commands = [ + [ + "pytest", + {replace = "posargs", extend = true}, + "--cov-fail-under=58", + "--cov-report=html", + "--cov-report=xml", + "--cov=ampform_dpd", + ], +] +description = "Compute test coverage" + +[tool.tox.env.doc] +allowlist_externals = ["sphinx-build"] +commands = [ + [ + "sphinx-build", + "--builder=html", + "--fail-on-warning", + "--keep-going", + "docs/", + "docs/_build/html", + ], +] +description = "Build documentation with Sphinx" + +[tool.tox.env.doclive] +allowlist_externals = ["sphinx-autobuild"] +commands = [ + [ + "sphinx-autobuild", + "--ignore=docs/_build/", + "--ignore=docs/_images/", + "--ignore=docs/api/", + "--ignore=docs/export/", + "--open-browser", + "--port=0", + "--re-ignore='.*/__pycache__/.*'", + "--re-ignore='.*/.ipynb_checkpoints/.*'", + "--re-ignore='.*/.virtual_documents/.*'", + "--re-ignore='.*\\.pdf'", + "--re-ignore='.*\\.pkl'", + "--re-ignore='.*\\.png'", + "--re-ignore='.*\\.svg'", + "--re-ignore='.*\\.tmp'", + "--watch=docs", + "--watch=src", + "docs/", + "docs/_build/html", + ], +] +description = "Set up a server to directly preview changes to the HTML pages" + +[tool.tox.env.docnb] +base = ["tool.tox.env.doc", "tool.tox.env_run_base"] +description = "{[tool.tox.env.doc]description} with cached notebook execution" +set_env.EXECUTE_NB = "yes" + +[tool.tox.env.docnb-force] +base = ["tool.tox.env.doc", "tool.tox.env_run_base"] +description = "{[tool.tox.env.doc]description} with notebook execution (no cache)" +set_env.FORCE_EXECUTE_NB = "yes" + +[tool.tox.env.docnblive] +base = ["tool.tox.env.doclive", "tool.tox.env_run_base"] +description = "{[tool.tox.env.doclive]description} with cached notebook execution" +set_env.EXECUTE_NB = "yes" + +[tool.tox.env.linkcheck] +allowlist_externals = ["sphinx-build"] +commands = [ + [ + "sphinx-build", + "--builder=linkcheck", + "--show-traceback", + "docs/", + "docs/_build/linkcheck", + ], +] +description = "Check external links in the documentation (requires internet connection)" +set_env.PYTHONWARNINGS = "" + +[tool.tox.env.nb] +allowlist_externals = ["pytest"] +commands = [ + [ + "pytest", + "--nbmake", + "--nbmake-timeout=0", + "{posargs:docs}", + ], +] +description = "Run all notebooks with pytest" + +[tool.tox.env.sty] +allowlist_externals = ["pre-commit"] +commands = [["pre-commit", "run", "--all-files", {replace = "posargs", extend = true}]] +description = "Perform all linting, formatting, and spelling checks" [tool.uv] -constraint-dependencies = ["numpy~=1.0"] +constraint-dependencies = [ + "numpy~=1.0", + "pygments!=2.19.*", # https://github.com/felix-hilden/sphinx-codeautolink/issues/152 + "sphinx-codeautolink!=0.16.0", +] diff --git a/uv.lock b/uv.lock index b4b6ab5..3969778 100644 --- a/uv.lock +++ b/uv.lock @@ -8,7 +8,11 @@ resolution-markers = [ ] [manifest] -constraints = [{ name = "numpy", specifier = "~=1.0" }] +constraints = [ + { name = "numpy", specifier = "~=1.0" }, + { name = "pygments", specifier = "!=2.19.*" }, + { name = "sphinx-codeautolink", specifier = "!=0.16.0" }, +] [[package]] name = "absl-py" @@ -296,7 +300,7 @@ types = [ [[package]] name = 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