From ff0072c415d13999ce31c9d183e7e9ca4a9316d1 Mon Sep 17 00:00:00 2001
From: GitHub <noreply@github.com>
Date: Sat, 2 Dec 2023 20:35:29 +0000
Subject: [PATCH 1/3] MAINT: update pip constraints and pre-commit

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 069d7a0ca..0791c044a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -39,7 +39,7 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/ComPWA/repo-maintenance
-    rev: 0.1.5
+    rev: 0.1.6
     hooks:
       - id: check-dev-files
         args:

From 20b9d946d7b8f5cc220ae668a1af804d2b58ffbb Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Sat, 2 Dec 2023 20:35:56 +0000
Subject: [PATCH 2/3] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 .pre-commit-config.yaml | 21 ++-------------------
 pyproject.toml          | 41 +++++++++++++++++++++++------------------
 2 files changed, 25 insertions(+), 37 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 0791c044a..4a7159868 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -56,16 +56,6 @@ repos:
           - --additional-packages=IPython
           - --extras-require=doc,viz
 
-  - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.1
-    hooks:
-      - id: nbqa-pyupgrade
-        args:
-          - --py37-plus
-      - id: nbqa-ruff
-        args:
-          - --fix
-
   - repo: https://github.com/psf/black-pre-commit-mirror
     rev: 23.11.0
     hooks:
@@ -153,19 +143,12 @@ repos:
     hooks:
       - id: pyright
 
-  - repo: https://github.com/asottile/pyupgrade
-    rev: v3.15.0
-    hooks:
-      - id: pyupgrade
-        args:
-          - --py37-plus
-
   - repo: https://github.com/astral-sh/ruff-pre-commit
     rev: v0.1.6
     hooks:
       - id: ruff
-        args:
-          - --fix
+        args: [--fix]
+        types_or: [python, pyi, jupyter]
 
   - repo: https://github.com/ComPWA/mirrors-taplo
     rev: v0.8.1
diff --git a/pyproject.toml b/pyproject.toml
index 4c77f36e2..c0808d04b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -88,10 +88,13 @@ format = [
     "black",
 ]
 jupyter = [
+    "isort",
     "jupyterlab",
     "jupyterlab-code-formatter",
+    "jupyterlab-git",
     "jupyterlab-lsp",
     "jupyterlab-myst",
+    "python-lsp-ruff",
     "python-lsp-server[rope]",
     'ypy-websocket <0.8.3; python_version <"3.8.0"',
 ]
@@ -220,24 +223,6 @@ module = ["pybtex.*"]
 ignore_missing_imports = true
 module = ["sphinx.*"]
 
-[tool.nbqa.addopts]
-ruff = [
-    "--extend-ignore=B018",
-    "--extend-ignore=C408",
-    "--extend-ignore=C90",
-    "--extend-ignore=D",
-    "--extend-ignore=F404",
-    "--extend-ignore=N806",
-    "--extend-ignore=N816",
-    "--extend-ignore=PLR09",
-    "--extend-ignore=PLR2004",
-    "--extend-ignore=PLW0602",
-    "--extend-ignore=PLW0603",
-    "--extend-ignore=S301", # allow pickle
-    "--extend-ignore=TCH002",
-    "--line-length=85",
-]
-
 [tool.pyright]
 exclude = [
     "**/.git",
@@ -304,6 +289,7 @@ testpaths = [
 
 [tool.ruff]
 extend-exclude = ["typings"]
+extend-include = ["*.ipynb"]
 extend-select = [
     "A",
     "B",
@@ -363,6 +349,25 @@ task-tags = ["cspell"]
 known-third-party = ["sympy"]
 
 [tool.ruff.per-file-ignores]
+"*.ipynb" = [
+    "B018",
+    "C408",
+    "C90",
+    "D",
+    "E402",
+    "E703",
+    "F404",
+    "N806",
+    "N816",
+    "PLR09",
+    "PLR2004",
+    "PLW0602",
+    "PLW0603",
+    "S101",
+    "S301",
+    "T201",
+    "TCH00",
+]
 "docs/*" = [
     "E402",
     "INP001",

From cb705c02df79fb0551025b1e2399a92a531ef182 Mon Sep 17 00:00:00 2001
From: GitHub <noreply@github.com>
Date: Sat, 2 Dec 2023 20:42:41 +0000
Subject: [PATCH 3/3] MAINT: update pip constraints and pre-commit

---
 .constraints/py3.10.txt | 10 ++++++++++
 .constraints/py3.11.txt | 10 ++++++++++
 .constraints/py3.12.txt | 10 ++++++++++
 .constraints/py3.7.txt  | 10 ++++++++++
 .constraints/py3.8.txt  | 10 ++++++++++
 .constraints/py3.9.txt  | 10 ++++++++++
 6 files changed, 60 insertions(+)

diff --git a/.constraints/py3.10.txt b/.constraints/py3.10.txt
index fef050933..197849042 100644
--- a/.constraints/py3.10.txt
+++ b/.constraints/py3.10.txt
@@ -18,6 +18,7 @@ beautifulsoup4==4.12.2
 black==23.11.0
 bleach==6.1.0
 cachetools==5.3.2
+cattrs==23.2.3
 certifi==2023.11.17
 cffi==1.16.0
 cfgv==3.4.0
@@ -42,6 +43,8 @@ fastjsonschema==2.19.0
 filelock==3.13.1
 fonttools==4.46.0
 fqdn==1.5.1
+gitdb==4.0.11
+gitpython==3.1.40
 gprof2dot==2022.7.29
 graphviz==0.20.1
 greenlet==3.0.1
@@ -57,6 +60,7 @@ ipython==8.18.1
 ipython-genutils==0.2.0
 ipywidgets==8.1.1
 isoduration==20.11.0
+isort==5.12.0
 jedi==0.19.1
 jinja2==3.1.2
 json5==0.9.14
@@ -69,9 +73,11 @@ jupyter-core==5.5.0
 jupyter-events==0.9.0
 jupyter-lsp==2.2.1
 jupyter-server==2.11.1
+jupyter-server-mathjax==0.2.6
 jupyter-server-terminals==0.4.4
 jupyterlab==4.0.9
 jupyterlab-code-formatter==2.2.1
+jupyterlab-git==0.50.0
 jupyterlab-lsp==5.0.1
 jupyterlab-myst==2.1.0
 jupyterlab-pygments==0.3.0
@@ -80,6 +86,7 @@ jupyterlab-widgets==3.0.9
 kiwisolver==1.4.5
 latexcodec==2.0.1
 livereload==2.6.3
+lsprotocol==2023.0.0
 markdown-it-py==2.2.0
 markupsafe==2.1.3
 matplotlib==3.8.2
@@ -95,6 +102,7 @@ myst-nb==1.0.0
 myst-parser==1.0.0
 nbclient==0.6.8
 nbconvert==7.11.0
+nbdime==4.0.1
 nbformat==5.9.2
 nbmake==1.4.6
 nest-asyncio==1.5.8
@@ -132,6 +140,7 @@ python-constraint==1.4.0
 python-dateutil==2.8.2
 python-json-logger==2.0.7
 python-lsp-jsonrpc==1.1.2
+python-lsp-ruff==2.0.0
 python-lsp-server==1.9.0
 pytoolconfig==1.2.6
 pyyaml==6.0.1
@@ -147,6 +156,7 @@ rpds-py==0.13.2
 ruff==0.1.6
 send2trash==1.8.2
 six==1.16.0
+smmap==5.0.1
 sniffio==1.3.0
 snowballstemmer==2.2.0
 soupsieve==2.5
diff --git a/.constraints/py3.11.txt b/.constraints/py3.11.txt
index e53b69226..187868c6a 100644
--- a/.constraints/py3.11.txt
+++ b/.constraints/py3.11.txt
@@ -18,6 +18,7 @@ beautifulsoup4==4.12.2
 black==23.11.0
 bleach==6.1.0
 cachetools==5.3.2
+cattrs==23.2.3
 certifi==2023.11.17
 cffi==1.16.0
 cfgv==3.4.0
@@ -41,6 +42,8 @@ fastjsonschema==2.19.0
 filelock==3.13.1
 fonttools==4.46.0
 fqdn==1.5.1
+gitdb==4.0.11
+gitpython==3.1.40
 gprof2dot==2022.7.29
 graphviz==0.20.1
 greenlet==3.0.1
@@ -56,6 +59,7 @@ ipython==8.18.1
 ipython-genutils==0.2.0
 ipywidgets==8.1.1
 isoduration==20.11.0
+isort==5.12.0
 jedi==0.19.1
 jinja2==3.1.2
 json5==0.9.14
@@ -68,9 +72,11 @@ jupyter-core==5.5.0
 jupyter-events==0.9.0
 jupyter-lsp==2.2.1
 jupyter-server==2.11.1
+jupyter-server-mathjax==0.2.6
 jupyter-server-terminals==0.4.4
 jupyterlab==4.0.9
 jupyterlab-code-formatter==2.2.1
+jupyterlab-git==0.50.0
 jupyterlab-lsp==5.0.1
 jupyterlab-myst==2.1.0
 jupyterlab-pygments==0.3.0
@@ -79,6 +85,7 @@ jupyterlab-widgets==3.0.9
 kiwisolver==1.4.5
 latexcodec==2.0.1
 livereload==2.6.3
+lsprotocol==2023.0.0
 markdown-it-py==2.2.0
 markupsafe==2.1.3
 matplotlib==3.8.2
@@ -94,6 +101,7 @@ myst-nb==1.0.0
 myst-parser==1.0.0
 nbclient==0.6.8
 nbconvert==7.11.0
+nbdime==4.0.1
 nbformat==5.9.2
 nbmake==1.4.6
 nest-asyncio==1.5.8
@@ -131,6 +139,7 @@ python-constraint==1.4.0
 python-dateutil==2.8.2
 python-json-logger==2.0.7
 python-lsp-jsonrpc==1.1.2
+python-lsp-ruff==2.0.0
 python-lsp-server==1.9.0
 pytoolconfig==1.2.6
 pyyaml==6.0.1
@@ -146,6 +155,7 @@ rpds-py==0.13.2
 ruff==0.1.6
 send2trash==1.8.2
 six==1.16.0
+smmap==5.0.1
 sniffio==1.3.0
 snowballstemmer==2.2.0
 soupsieve==2.5
diff --git a/.constraints/py3.12.txt b/.constraints/py3.12.txt
index 8f0481f4f..db92cd340 100644
--- a/.constraints/py3.12.txt
+++ b/.constraints/py3.12.txt
@@ -18,6 +18,7 @@ beautifulsoup4==4.12.2
 black==23.11.0
 bleach==6.1.0
 cachetools==5.3.2
+cattrs==23.2.3
 certifi==2023.11.17
 cffi==1.16.0
 cfgv==3.4.0
@@ -41,6 +42,8 @@ fastjsonschema==2.19.0
 filelock==3.13.1
 fonttools==4.46.0
 fqdn==1.5.1
+gitdb==4.0.11
+gitpython==3.1.40
 gprof2dot==2022.7.29
 graphviz==0.20.1
 greenlet==3.0.1
@@ -56,6 +59,7 @@ ipython==8.18.1
 ipython-genutils==0.2.0
 ipywidgets==8.1.1
 isoduration==20.11.0
+isort==5.12.0
 jedi==0.19.1
 jinja2==3.1.2
 json5==0.9.14
@@ -68,9 +72,11 @@ jupyter-core==5.5.0
 jupyter-events==0.9.0
 jupyter-lsp==2.2.1
 jupyter-server==2.11.1
+jupyter-server-mathjax==0.2.6
 jupyter-server-terminals==0.4.4
 jupyterlab==4.0.9
 jupyterlab-code-formatter==2.2.1
+jupyterlab-git==0.50.0
 jupyterlab-lsp==5.0.1
 jupyterlab-myst==2.1.0
 jupyterlab-pygments==0.3.0
@@ -79,6 +85,7 @@ jupyterlab-widgets==3.0.9
 kiwisolver==1.4.5
 latexcodec==2.0.1
 livereload==2.6.3
+lsprotocol==2023.0.0
 markdown-it-py==2.2.0
 markupsafe==2.1.3
 matplotlib==3.8.2
@@ -94,6 +101,7 @@ myst-nb==1.0.0
 myst-parser==1.0.0
 nbclient==0.6.8
 nbconvert==7.11.0
+nbdime==4.0.1
 nbformat==5.9.2
 nbmake==1.4.6
 nest-asyncio==1.5.8
@@ -131,6 +139,7 @@ python-constraint==1.4.0
 python-dateutil==2.8.2
 python-json-logger==2.0.7
 python-lsp-jsonrpc==1.1.2
+python-lsp-ruff==2.0.0
 python-lsp-server==1.9.0
 pytoolconfig==1.2.6
 pyyaml==6.0.1
@@ -146,6 +155,7 @@ rpds-py==0.13.2
 ruff==0.1.6
 send2trash==1.8.2
 six==1.16.0
+smmap==5.0.1
 sniffio==1.3.0
 snowballstemmer==2.2.0
 soupsieve==2.5
diff --git a/.constraints/py3.7.txt b/.constraints/py3.7.txt
index b70db5996..828076b16 100644
--- a/.constraints/py3.7.txt
+++ b/.constraints/py3.7.txt
@@ -20,6 +20,7 @@ black==23.3.0
 bleach==6.0.0
 cached-property==1.5.2
 cachetools==5.3.2
+cattrs==23.1.2
 certifi==2023.11.17
 cffi==1.15.1
 cfgv==3.3.1
@@ -43,6 +44,8 @@ fastjsonschema==2.19.0
 filelock==3.12.2
 fonttools==4.38.0
 fqdn==1.5.1
+gitdb==4.0.11
+gitpython==3.1.40
 gprof2dot==2022.7.29
 graphviz==0.20.1
 greenlet==3.0.1
@@ -59,6 +62,7 @@ ipython==7.34.0
 ipython-genutils==0.2.0
 ipywidgets==8.1.1
 isoduration==20.11.0
+isort==5.11.5
 jedi==0.18.2
 jinja2==3.1.2
 json5==0.9.14
@@ -71,10 +75,12 @@ jupyter-events==0.6.3
 jupyter-lsp==1.5.1
 jupyter-server==1.24.0
 jupyter-server-fileid==0.9.0
+jupyter-server-mathjax==0.2.6
 jupyter-server-ydoc==0.8.0
 jupyter-ydoc==0.2.4
 jupyterlab==3.6.6
 jupyterlab-code-formatter==2.2.1
+jupyterlab-git==0.44.0
 jupyterlab-lsp==3.10.2
 jupyterlab-myst==1.2.0
 jupyterlab-pygments==0.2.2
@@ -83,6 +89,7 @@ jupyterlab-widgets==3.0.9
 kiwisolver==1.4.5
 latexcodec==2.0.1
 livereload==2.6.3
+lsprotocol==2023.0.0
 markdown-it-py==2.2.0
 markupsafe==2.1.3
 matplotlib==3.5.3
@@ -99,6 +106,7 @@ myst-parser==0.18.1
 nbclassic==1.0.0
 nbclient==0.5.13
 nbconvert==7.6.0
+nbdime==3.2.1
 nbformat==5.8.0
 nbmake==1.2.1
 nest-asyncio==1.5.8
@@ -139,6 +147,7 @@ python-constraint==1.4.0
 python-dateutil==2.8.2
 python-json-logger==2.0.7
 python-lsp-jsonrpc==1.0.0
+python-lsp-ruff==1.6.0
 python-lsp-server==1.7.4
 pytoolconfig==1.2.6
 pytz==2023.3.post1
@@ -154,6 +163,7 @@ ruff==0.1.6
 send2trash==1.8.2
 singledispatchmethod==1.0 ; python_version < "3.8.0"
 six==1.16.0
+smmap==5.0.1
 sniffio==1.3.0
 snowballstemmer==2.2.0
 soupsieve==2.4.1
diff --git a/.constraints/py3.8.txt b/.constraints/py3.8.txt
index 6d7f55513..579a9cc51 100644
--- a/.constraints/py3.8.txt
+++ b/.constraints/py3.8.txt
@@ -19,6 +19,7 @@ beautifulsoup4==4.12.2
 black==23.11.0
 bleach==6.1.0
 cachetools==5.3.2
+cattrs==23.2.3
 certifi==2023.11.17
 cffi==1.16.0
 cfgv==3.4.0
@@ -43,6 +44,8 @@ fastjsonschema==2.19.0
 filelock==3.13.1
 fonttools==4.46.0
 fqdn==1.5.1
+gitdb==4.0.11
+gitpython==3.1.40
 gprof2dot==2022.7.29
 graphviz==0.20.1
 greenlet==3.0.1
@@ -59,6 +62,7 @@ ipython==8.12.3
 ipython-genutils==0.2.0
 ipywidgets==8.1.1
 isoduration==20.11.0
+isort==5.12.0
 jedi==0.19.1
 jinja2==3.1.2
 json5==0.9.14
@@ -71,9 +75,11 @@ jupyter-core==5.5.0
 jupyter-events==0.9.0
 jupyter-lsp==2.2.1
 jupyter-server==2.11.1
+jupyter-server-mathjax==0.2.6
 jupyter-server-terminals==0.4.4
 jupyterlab==4.0.9
 jupyterlab-code-formatter==2.2.1
+jupyterlab-git==0.50.0
 jupyterlab-lsp==5.0.1
 jupyterlab-myst==2.1.0
 jupyterlab-pygments==0.3.0
@@ -82,6 +88,7 @@ jupyterlab-widgets==3.0.9
 kiwisolver==1.4.5
 latexcodec==2.0.1
 livereload==2.6.3
+lsprotocol==2023.0.0
 markdown-it-py==2.2.0
 markupsafe==2.1.3
 matplotlib==3.7.4
@@ -97,6 +104,7 @@ myst-nb==0.17.2
 myst-parser==0.18.1
 nbclient==0.6.8
 nbconvert==7.11.0
+nbdime==4.0.1
 nbformat==5.9.2
 nbmake==1.4.6
 nest-asyncio==1.5.8
@@ -136,6 +144,7 @@ python-constraint==1.4.0
 python-dateutil==2.8.2
 python-json-logger==2.0.7
 python-lsp-jsonrpc==1.1.2
+python-lsp-ruff==2.0.0
 python-lsp-server==1.9.0
 pytoolconfig==1.2.6
 pytz==2023.3.post1
@@ -152,6 +161,7 @@ rpds-py==0.13.2
 ruff==0.1.6
 send2trash==1.8.2
 six==1.16.0
+smmap==5.0.1
 sniffio==1.3.0
 snowballstemmer==2.2.0
 soupsieve==2.5
diff --git a/.constraints/py3.9.txt b/.constraints/py3.9.txt
index bfc6af8e2..558cba688 100644
--- a/.constraints/py3.9.txt
+++ b/.constraints/py3.9.txt
@@ -18,6 +18,7 @@ beautifulsoup4==4.12.2
 black==23.11.0
 bleach==6.1.0
 cachetools==5.3.2
+cattrs==23.2.3
 certifi==2023.11.17
 cffi==1.16.0
 cfgv==3.4.0
@@ -42,6 +43,8 @@ fastjsonschema==2.19.0
 filelock==3.13.1
 fonttools==4.46.0
 fqdn==1.5.1
+gitdb==4.0.11
+gitpython==3.1.40
 gprof2dot==2022.7.29
 graphviz==0.20.1
 greenlet==3.0.1
@@ -58,6 +61,7 @@ ipython==8.18.1
 ipython-genutils==0.2.0
 ipywidgets==8.1.1
 isoduration==20.11.0
+isort==5.12.0
 jedi==0.19.1
 jinja2==3.1.2
 json5==0.9.14
@@ -70,9 +74,11 @@ jupyter-core==5.5.0
 jupyter-events==0.9.0
 jupyter-lsp==2.2.1
 jupyter-server==2.11.1
+jupyter-server-mathjax==0.2.6
 jupyter-server-terminals==0.4.4
 jupyterlab==4.0.9
 jupyterlab-code-formatter==2.2.1
+jupyterlab-git==0.50.0
 jupyterlab-lsp==5.0.1
 jupyterlab-myst==2.1.0
 jupyterlab-pygments==0.3.0
@@ -81,6 +87,7 @@ jupyterlab-widgets==3.0.9
 kiwisolver==1.4.5
 latexcodec==2.0.1
 livereload==2.6.3
+lsprotocol==2023.0.0
 markdown-it-py==2.2.0
 markupsafe==2.1.3
 matplotlib==3.8.2
@@ -96,6 +103,7 @@ myst-nb==1.0.0
 myst-parser==1.0.0
 nbclient==0.6.8
 nbconvert==7.11.0
+nbdime==4.0.1
 nbformat==5.9.2
 nbmake==1.4.6
 nest-asyncio==1.5.8
@@ -133,6 +141,7 @@ python-constraint==1.4.0
 python-dateutil==2.8.2
 python-json-logger==2.0.7
 python-lsp-jsonrpc==1.1.2
+python-lsp-ruff==2.0.0
 python-lsp-server==1.9.0
 pytoolconfig==1.2.6
 pyyaml==6.0.1
@@ -148,6 +157,7 @@ rpds-py==0.13.2
 ruff==0.1.6
 send2trash==1.8.2
 six==1.16.0
+smmap==5.0.1
 sniffio==1.3.0
 snowballstemmer==2.2.0
 soupsieve==2.5