From a0d956327453c582c67d1418bbbd04a9cd013f7b Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Fri, 18 Oct 2024 11:49:45 +0200 Subject: [PATCH] DX: modernize dev environment with `uv` --- .binder/postBuild | 10 + .binder/runtime.txt | 1 + .cspell.json | 1 + .editorconfig | 2 +- .envrc | 3 +- .github/workflows/lock.yml | 22 + .github/workflows/notebook.yml | 14 +- .gitignore | 1 - .pre-commit-config.yaml | 59 +- .python-version | 1 + .vscode/extensions.json | 1 + .vscode/settings.json | 3 + 2021.12.13/ampform.ipynb | 6 +- README.md | 3 +- binder/requirements.txt | 4 +- environment.yml | 11 - pyproject.toml | 64 +- requirements.in | 14 - requirements.txt | 134 -- tox.ini | 31 - uv.lock | 2178 ++++++++++++++++++++++++++++++++ 21 files changed, 2325 insertions(+), 238 deletions(-) create mode 100755 .binder/postBuild create mode 100644 .binder/runtime.txt create mode 100644 .github/workflows/lock.yml create mode 100644 .python-version delete mode 100644 environment.yml delete mode 100644 requirements.in delete mode 100644 requirements.txt delete mode 100644 tox.ini create mode 100644 uv.lock diff --git a/.binder/postBuild b/.binder/postBuild new file mode 100755 index 0000000..8da2dfc --- /dev/null +++ b/.binder/postBuild @@ -0,0 +1,10 @@ +#!/bin/bash +set -ex +curl -LsSf https://astral.sh/uv/install.sh | sh +source $HOME/.cargo/env +uv export \ + > requirements.txt +uv pip install \ + --requirement requirements.txt \ + --system +uv cache clean diff --git a/.binder/runtime.txt b/.binder/runtime.txt new file mode 100644 index 0000000..d2aca3a --- /dev/null +++ b/.binder/runtime.txt @@ -0,0 +1 @@ +python-3.12 diff --git a/.cspell.json b/.cspell.json index c7cda3c..61b504a 100644 --- a/.cspell.json +++ b/.cspell.json @@ -15,6 +15,7 @@ ], "ignorePaths": [ "**/.cspell.json", + ".envrc", ".github/workflows", ".gitignore", ".pre-commit-config.yaml", diff --git a/.editorconfig b/.editorconfig index 88befe6..674376f 100644 --- a/.editorconfig +++ b/.editorconfig @@ -16,5 +16,5 @@ indent_size = 4 [LICENSE] indent_size = unset -[setup.cfg] +[uv.lock] indent_size = 4 diff --git a/.envrc b/.envrc index cce3aa5..41fd2ca 100644 --- a/.envrc +++ b/.envrc @@ -1 +1,2 @@ -layout anaconda +uv sync --all-extras --quiet +source .venv/bin/activate diff --git a/.github/workflows/lock.yml b/.github/workflows/lock.yml new file mode 100644 index 0000000..6a13858 --- /dev/null +++ b/.github/workflows/lock.yml @@ -0,0 +1,22 @@ +name: Update + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: |- + ${{ github.ref != format('refs/heads/{0}', github.event.repository.default_branch) }} + +on: + pull_request: + branches: + - main + - epic/* + paths: + - .pre-commit-config.yaml + - uv.lock + workflow_dispatch: + +jobs: + lock: + uses: ComPWA/actions/.github/workflows/lock.yml@v2 + secrets: + token: ${{ secrets.PAT }} diff --git a/.github/workflows/notebook.yml b/.github/workflows/notebook.yml index dee7090..758b9e0 100644 --- a/.github/workflows/notebook.yml +++ b/.github/workflows/notebook.yml @@ -23,14 +23,14 @@ jobs: - uses: actions/checkout@v4 - uses: actions/setup-python@v5 with: - python-version: "3.9" - - uses: hynek/setup-cached-uv@v2 - - name: Install dependencies - run: | - sudo apt-get -y install graphviz - pip install uv + python-version: "3.10" + - uses: astral-sh/setup-uv@v3 + with: + enable-cache: true + - name: Install graphviz + run: sudo apt-get -y install graphviz - run: | for notebook in $(git ls-files | grep ipynb); do - uv pip sync requirements.txt --quiet --system + uv sync --extra dev --quiet pytest $notebook --no-header done diff --git a/.gitignore b/.gitignore index efdfab5..14fd9c3 100644 --- a/.gitignore +++ b/.gitignore @@ -3,5 +3,4 @@ .ipynb_checkpoints/ .tox/ .virtual_documents/ -condaenv.*.requirements.txt node_modules/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 3b9ad11..09d3220 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,9 +1,6 @@ ci: - autoupdate_commit_msg: "MAINT: autoupdate pre-commit hooks" + autoupdate_commit_msg: "MAINT: update lock files" autoupdate_schedule: quarterly - skip: - - prettier - - taplo repos: - repo: meta @@ -11,11 +8,26 @@ repos: - id: check-hooks-apply - id: check-useless-excludes + - repo: /data/local/redeboer/work/ComPWA/policy + rev: 0.5.0rc10 + hooks: + - id: check-dev-files + args: + - --no-cd + - --no-cspell-update + - --no-github-actions + - --no-pypi + - --repo-name=ComPWA-demo + - --repo-title="ComPWA demos" + - id: colab-toc-visible + - id: remove-empty-tags + - repo: https://github.com/kynan/nbstripout rev: 0.7.1 hooks: - id: nbstripout args: + - --drop-empty-cells - --extra-keys - | cell.attachments @@ -38,24 +50,8 @@ repos: metadata.varInspector metadata.vscode - - repo: https://github.com/ComPWA/policy - rev: 0.3.18 - hooks: - - id: check-dev-files - args: - - --no-cspell-update - - --no-github-actions - - --no-gitpod - - --no-prettierrc - - --no-pypi - - --no-version-branches - - --repo-name=ComPWA-demo - - --repo-title="ComPWA demos" - - id: colab-toc-visible - - id: remove-empty-tags - - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.5.7 + rev: v0.7.0 hooks: - id: ruff args: [--fix] @@ -64,7 +60,7 @@ repos: types_or: [python, pyi, jupyter] - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 + rev: v5.0.0 hooks: - id: check-case-conflict - id: check-json @@ -80,15 +76,15 @@ repos: - id: mixed-line-ending - id: trailing-whitespace - - repo: https://github.com/pre-commit/mirrors-prettier - rev: v4.0.0-alpha.8 + - repo: https://github.com/ComPWA/prettier-pre-commit + rev: v3.3.3 hooks: - id: prettier - - repo: https://github.com/ComPWA/mirrors-taplo - rev: v0.8.1 + - repo: https://github.com/ComPWA/taplo-pre-commit + rev: v0.9.3 hooks: - - id: taplo + - id: taplo-format - repo: https://github.com/pappasam/toml-sort rev: v0.23.1 @@ -98,13 +94,18 @@ repos: - --in-place - repo: https://github.com/streetsidesoftware/cspell-cli - rev: v8.13.2 + rev: v8.15.1 hooks: - id: cspell - repo: https://github.com/editorconfig-checker/editorconfig-checker.python - rev: 2.7.3 + rev: 3.0.3 hooks: - id: editorconfig-checker name: editorconfig alias: ec + + - repo: https://github.com/astral-sh/uv-pre-commit + rev: 0.4.24 + hooks: + - id: uv-lock diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..e4fba21 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.12 diff --git a/.vscode/extensions.json b/.vscode/extensions.json index 7f72746..6bd7aa6 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -5,6 +5,7 @@ "editorconfig.editorconfig", "esbenp.prettier-vscode", "github.vscode-github-actions", + "mhutchie.git-graph", "ms-python.python", "ms-vsliveshare.vsliveshare", "redhat.vscode-yaml", diff --git a/.vscode/settings.json b/.vscode/settings.json index cf31567..5bed332 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -48,5 +48,8 @@ "ruff.enable": true, "ruff.importStrategy": "fromEnvironment", "ruff.organizeImports": true, + "search.exclude": { + "**/uv.lock": true + }, "telemetry.telemetryLevel": "off" } diff --git a/2021.12.13/ampform.ipynb b/2021.12.13/ampform.ipynb index 5b14d69..8617ca2 100644 --- a/2021.12.13/ampform.ipynb +++ b/2021.12.13/ampform.ipynb @@ -48,7 +48,7 @@ "source": [ "%load_ext autoreload\n", "%autoreload\n", - "from functools import lru_cache\n", + "from functools import cache\n", "\n", "import ampform\n", "import graphviz\n", @@ -304,7 +304,7 @@ " return expr\n", "\n", "\n", - "@lru_cache(maxsize=None)\n", + "@cache\n", "def get_amplitude(\n", " name,\n", " doit,\n", @@ -327,7 +327,7 @@ " return expr\n", "\n", "\n", - "@lru_cache(maxsize=None)\n", + "@cache\n", "def create_graph(expression, fig_size, visualize_cse):\n", " if fig_size == \"full\":\n", " fig_size = None\n", diff --git a/README.md b/README.md index 51f0919..098b92c 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,9 @@ # ComPWA demo notebooks -[![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff) [![code style: prettier](https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square)](https://github.com/prettier/prettier) [![Spelling checked](https://img.shields.io/badge/cspell-checked-brightgreen.svg)](https://github.com/streetsidesoftware/cspell/tree/master/packages/cspell) +[![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff) +[![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)](https://github.com/astral-sh/uv) A collection of Jupyter notebooks that demonstrate features of the [ComPWA](https://github.com/ComPWA) packages [QRules](https://qrules.rtfd.io), [AmpForm](https://ampform.rtfd.io), and [TensorWaves](https://tensorwaves.rtfd.io). The notebooks are self-contained in the sense that they define their own pinned requirements and can be run independently in [Binder](https://mybinder.org) or [Google Colaboratory](https://research.google.com/colaboratory). diff --git a/binder/requirements.txt b/binder/requirements.txt index 22026b2..99467d6 100644 --- a/binder/requirements.txt +++ b/binder/requirements.txt @@ -3,9 +3,8 @@ asttokens==2.4.1 comm==0.2.2 decorator==5.1.1 -exceptiongroup==1.2.2 executing==2.1.0 -ipython==8.18.1 +ipython==8.28.0 ipywidgets==8.1.5 jedi==0.19.1 jupyterlab-widgets==3.0.13 @@ -19,7 +18,6 @@ pygments==2.18.0 six==1.16.0 stack-data==0.6.3 traitlets==5.14.3 -typing-extensions==4.12.2 uv==0.4.20 wcwidth==0.2.13 widgetsnbextension==4.0.13 diff --git a/environment.yml b/environment.yml deleted file mode 100644 index 9185dd9..0000000 --- a/environment.yml +++ /dev/null @@ -1,11 +0,0 @@ -name: compwa-demo -dependencies: - - python==3.9.* - - pip>=19 - - graphviz - - pip: - - >- - -c requirements.txt - -r requirements.in -variables: - PRETTIER_LEGACY_CLI: 1 diff --git a/pyproject.toml b/pyproject.toml index 55975ca..9e0cffd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,3 +1,28 @@ +[project] +name = "compwa-demo" +requires-python = ">=3.9" +version = "0.0.0" + +[project.optional-dependencies] +dev = [ + "compwa-demo[binder]", + "jupyterlab >=3", + "jupyterlab-code-formatter >=3.0.0", + "jupyterlab-git", + "jupyterlab-lsp", + "nbmake", + "pre-commit-uv", + "pytest", + "python-lsp-ruff", + "python-lsp-server[rope]", + "ruff", + "tox", + "uv", +] + +[tool.setuptools.dynamic] +dependencies = {file = ["binder/requirements.in"]} + [tool.pytest.ini_options] addopts = [ "--color=yes", @@ -12,7 +37,6 @@ filterwarnings = [ extend-include = ["*.ipynb"] preview = true show-fixes = true -target-version = "py37" [tool.ruff.format] docstring-code-format = true @@ -90,6 +114,42 @@ sort_first = [ "tool.setuptools", "tool.setuptools_scm", ] -sort_table_keys = true spaces_indent_inline_array = 4 trailing_comma_inline_array = true + +[tool.tox] +legacy_tox_ini = """ +[tox] +envlist = + sty, +skip_install = True +skip_missing_interpreters = True +skipsdist = True + +[testenv] +passenv = * + +[testenv:nb] +allowlist_externals = + pytest +commands = + pytest {posargs} +description = Run all notebooks with pytest + +[testenv:sty] +allowlist_externals = + pre-commit +commands = + pre-commit --all-files run {posargs} +description = Perform all linting, formatting, and spelling checks + +[testenv:update] +allowlist_externals = + uv + uvx +commands = + uv pip compile binder/requirements.in -o binder/requirements.txt --no-annotate --strip-extras --upgrade + uv lock --upgrade + uvx pre-commit autoupdate +description = Update all lock files +""" diff --git a/requirements.in b/requirements.in deleted file mode 100644 index ebc8996..0000000 --- a/requirements.in +++ /dev/null @@ -1,14 +0,0 @@ --c binder/requirements.txt --r binder/requirements.in -jupyterlab >=3 -jupyterlab-code-formatter >=3.0.0 -jupyterlab-git -jupyterlab-lsp -nbmake -pre-commit -pytest -python-lsp-ruff -python-lsp-server[rope] -ruff -tox -uv diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 37bb770..0000000 --- a/requirements.txt +++ /dev/null @@ -1,134 +0,0 @@ -# This file was autogenerated by uv via the following command: -# uv pip compile requirements.in -o requirements.txt --no-annotate --strip-extras -anyio==4.6.0 -argon2-cffi==23.1.0 -argon2-cffi-bindings==21.2.0 -arrow==1.3.0 -asttokens==2.4.1 -async-lru==2.0.4 -attrs==24.2.0 -babel==2.16.0 -beautifulsoup4==4.12.3 -bleach==6.1.0 -cachetools==5.5.0 -cattrs==24.1.2 -certifi==2024.8.30 -cffi==1.17.1 -cfgv==3.4.0 -chardet==5.2.0 -charset-normalizer==3.4.0 -colorama==0.4.6 -comm==0.2.2 -debugpy==1.8.7 -decorator==5.1.1 -defusedxml==0.7.1 -distlib==0.3.9 -docstring-to-markdown==0.15 -exceptiongroup==1.2.2 -executing==2.0.1 -fastjsonschema==2.20.0 -filelock==3.16.1 -fqdn==1.5.1 -gitdb==4.0.11 -gitpython==3.1.43 -h11==0.14.0 -httpcore==1.0.6 -httpx==0.27.2 -identify==2.6.1 -idna==3.10 -importlib-metadata==8.5.0 -iniconfig==2.0.0 -ipykernel==6.29.5 -ipython==8.18.1 -ipywidgets==8.1.3 -isoduration==20.11.0 -jedi==0.19.1 -jinja2==3.1.4 -json5==0.9.25 -jsonpointer==3.0.0 -jsonschema==4.23.0 -jsonschema-specifications==2024.10.1 -jupyter-client==8.6.3 -jupyter-core==5.7.2 -jupyter-events==0.10.0 -jupyter-lsp==2.2.5 -jupyter-server==2.14.2 -jupyter-server-mathjax==0.2.6 -jupyter-server-terminals==0.5.3 -jupyterlab==4.2.5 -jupyterlab-code-formatter==3.0.2 -jupyterlab-git==0.50.1 -jupyterlab-lsp==5.1.0 -jupyterlab-pygments==0.3.0 -jupyterlab-server==2.27.3 -jupyterlab-widgets==3.0.11 -lsprotocol==2023.0.1 -markupsafe==3.0.1 -matplotlib-inline==0.1.7 -mistune==3.0.2 -nbclient==0.6.8 -nbconvert==7.16.4 -nbdime==4.0.2 -nbformat==5.10.4 -nbmake==1.5.4 -nest-asyncio==1.6.0 -nodeenv==1.9.1 -notebook-shim==0.2.4 -overrides==7.7.0 -packaging==24.1 -pandocfilters==1.5.1 -parso==0.8.4 -pexpect==4.9.0 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