From ea645ded28004fef5537329e8c27b9650e955a81 Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Mon, 28 Oct 2024 14:19:38 +0100
Subject: [PATCH] FIX: define dev dependencies as dependency groups (#40)

* DX: recommend pull request VS Code extension
* MAINT: update lock files
---
 .binder/postBuild              |   4 +
 .github/workflows/notebook.yml |   2 +-
 .pre-commit-config.yaml        |   6 +-
 .vscode/extensions.json        |   1 +
 2021.11.29/uv.lock             | 202 +--------------------------------
 2021.12.13/uv.lock             | 202 +--------------------------------
 pyproject.toml                 |  21 ++--
 uv.lock                        | 131 ++++++++++++++-------
 8 files changed, 113 insertions(+), 456 deletions(-)

diff --git a/.binder/postBuild b/.binder/postBuild
index 8da2dfc..06472a5 100755
--- a/.binder/postBuild
+++ b/.binder/postBuild
@@ -3,8 +3,12 @@ set -ex
 curl -LsSf https://astral.sh/uv/install.sh | sh
 source $HOME/.cargo/env
 uv export \
+  --group jupyter \
+  --group notebooks \
+  --no-dev \
   > requirements.txt
 uv pip install \
   --requirement requirements.txt \
   --system
+rm requirements.txt
 uv cache clean
diff --git a/.github/workflows/notebook.yml b/.github/workflows/notebook.yml
index 05e91cc..0d6712a 100644
--- a/.github/workflows/notebook.yml
+++ b/.github/workflows/notebook.yml
@@ -29,4 +29,4 @@ jobs:
           enable-cache: true
       - name: Install graphviz
         run: sudo apt-get -y install graphviz
-      - run: uv run --extra dev pytest
+      - run: uv run --group test --no-dev pytest
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 2920a3b..5e43ebb 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -9,7 +9,7 @@ repos:
       - id: check-useless-excludes
 
   - repo: https://github.com/ComPWA/policy
-    rev: 0.5.1
+    rev: 0.5.5
     hooks:
       - id: check-dev-files
         args:
@@ -52,7 +52,7 @@ repos:
             metadata.vscode
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.7.0
+    rev: v0.7.1
     hooks:
       - id: ruff
         args: [--fix]
@@ -107,6 +107,6 @@ repos:
         alias: ec
 
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.4.25
+    rev: 0.4.27
     hooks:
       - id: uv-lock
diff --git a/.vscode/extensions.json b/.vscode/extensions.json
index 6bd7aa6..0370e69 100644
--- a/.vscode/extensions.json
+++ b/.vscode/extensions.json
@@ -5,6 +5,7 @@
     "editorconfig.editorconfig",
     "esbenp.prettier-vscode",
     "github.vscode-github-actions",
+    "github.vscode-pull-request-github",
     "mhutchie.git-graph",
     "ms-python.python",
     "ms-vsliveshare.vsliveshare",
diff --git a/2021.11.29/uv.lock b/2021.11.29/uv.lock
index e081ea0..ad6a44f 100644
--- a/2021.11.29/uv.lock
+++ b/2021.11.29/uv.lock
@@ -1,9 +1,5 @@
 version = 1
-requires-python = ">=3.11"
-resolution-markers = [
-    "python_full_version < '3.12'",
-    "python_full_version >= '3.12'",
-]
+requires-python = ">=3.12"
 
 [[package]]
 name = "2021-11-29"
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diff --git a/pyproject.toml b/pyproject.toml
index 9c7e568..bceef6a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,19 +6,26 @@ name = "compwa-demo"
 requires-python = ">=3.12"
 version = "0.0.0"
 
-[project.optional-dependencies]
+[dependency-groups]
 dev = [
-    "compwa-demo[binder]",
+    "ruff",
+    {include-group = "jupyter"},
+    {include-group = "test"},
+]
+jupyter = [
     "jupyterlab",
-    "jupyterlab-code-formatter >=3.0.0",
+    "jupyterlab-code-formatter",
     "jupyterlab-git",
     "jupyterlab-lsp",
-    "nbmake",
-    "pyproject-local-kernel",
-    "pytest",
+    "jupyterlab-myst",
     "python-lsp-ruff",
     "python-lsp-server[rope]",
-    "ruff",
+    {include-group = "notebooks"},
+]
+notebooks = ["pyproject-local-kernel"]
+test = [
+    "nbmake",
+    {include-group = "notebooks"},
 ]
 
 [tool.pytest.ini_options]
diff --git a/uv.lock b/uv.lock
index f9f2d4c..41dce00 100644
--- a/uv.lock
+++ b/uv.lock
@@ -255,34 +255,67 @@ dependencies = [
     { name = "ipywidgets" },
 ]
 
-[package.optional-dependencies]
+[package.dependency-groups]
 dev = [
     { name = "jupyterlab" },
     { name = "jupyterlab-code-formatter" },
     { name = "jupyterlab-git" },
     { name = "jupyterlab-lsp" },
+    { name = "jupyterlab-myst" },
     { name = "nbmake" },
     { name = "pyproject-local-kernel" },
-    { name = "pytest" },
     { name = "python-lsp-ruff" },
     { name = "python-lsp-server", extra = ["rope"] },
     { name = "ruff" },
 ]
+jupyter = [
+    { name = "jupyterlab" },
+    { name = "jupyterlab-code-formatter" },
+    { name = "jupyterlab-git" },
+    { name = "jupyterlab-lsp" },
+    { name = "jupyterlab-myst" },
+    { name = "pyproject-local-kernel" },
+    { name = "python-lsp-ruff" },
+    { name = "python-lsp-server", extra = ["rope"] },
+]
+notebooks = [
+    { name = "pyproject-local-kernel" },
+]
+test = [
+    { name = "nbmake" },
+    { name = "pyproject-local-kernel" },
+]
 
 [package.metadata]
-requires-dist = [
-    { name = "compwa-demo", extras = ["binder"], marker = "extra == 'dev'" },
-    { name = "ipywidgets" },
-    { name = "jupyterlab", marker = "extra == 'dev'" },
-    { name = "jupyterlab-code-formatter", marker = "extra == 'dev'", specifier = ">=3.0.0" },
-    { name = "jupyterlab-git", marker = "extra == 'dev'" },
-    { name = "jupyterlab-lsp", marker = "extra == 'dev'" },
-    { name = "nbmake", marker = "extra == 'dev'" },
-    { name = "pyproject-local-kernel", marker = "extra == 'dev'" },
-    { name = "pytest", marker = "extra == 'dev'" },
-    { name = "python-lsp-ruff", marker = "extra == 'dev'" },
-    { name = "python-lsp-server", extras = ["rope"], marker = "extra == 'dev'" },
-    { name = "ruff", marker = "extra == 'dev'" },
+requires-dist = [{ name = "ipywidgets" }]
+
+[package.metadata.dependency-groups]
+dev = [
+    { name = "jupyterlab" },
+    { name = "jupyterlab-code-formatter" },
+    { name = "jupyterlab-git" },
+    { name = "jupyterlab-lsp" },
+    { name = "jupyterlab-myst" },
+    { name = "nbmake" },
+    { name = "pyproject-local-kernel" },
+    { name = "python-lsp-ruff" },
+    { name = "python-lsp-server", extras = ["rope"] },
+    { name = "ruff" },
+]
+jupyter = [
+    { name = "jupyterlab" },
+    { name = "jupyterlab-code-formatter" },
+    { name = "jupyterlab-git" },
+    { name = "jupyterlab-lsp" },
+    { name = "jupyterlab-myst" },
+    { name = "pyproject-local-kernel" },
+    { name = "python-lsp-ruff" },
+    { name = "python-lsp-server", extras = ["rope"] },
+]
+notebooks = [{ name = "pyproject-local-kernel" }]
+test = [
+    { name = "nbmake" },
+    { name = "pyproject-local-kernel" },
 ]
 
 [[package]]
@@ -462,7 +495,7 @@ wheels = [
 
 [[package]]
 name = "ipython"
-version = "8.28.0"
+version = "8.29.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "colorama", marker = "sys_platform == 'win32'" },
@@ -475,9 +508,9 @@ dependencies = [
     { name = "stack-data" },
     { name = "traitlets" },
 ]
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+sdist = { url = "https://files.pythonhosted.org/packages/85/e0/a3f36dde97e12121106807d80485423ae4c5b27ce60d40d4ab0bab18a9db/ipython-8.29.0.tar.gz", hash = "sha256:40b60e15b22591450eef73e40a027cf77bd652e757523eebc5bd7c7c498290eb", size = 5497513 }
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+    { url = "https://files.pythonhosted.org/packages/c5/a5/c15ed187f1b3fac445bb42a2dedd8dec1eee1718b35129242049a13a962f/ipython-8.29.0-py3-none-any.whl", hash = "sha256:0188a1bd83267192123ccea7f4a8ed0a78910535dbaa3f37671dca76ebd429c8", size = 819911 },
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@@ -771,6 +804,18 @@ wheels = [
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 ]
 
+[[package]]
+name = "jupyterlab-myst"
+version = "2.4.2"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "jupyter-server", marker = "platform_system != 'Emscripten'" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/5c/dc/4034f4f4e60e484094b96cde80bd3a387d5d1ad1d43e9918f6c5fde297b7/jupyterlab_myst-2.4.2.tar.gz", hash = "sha256:1b06de66d20dc3a865b07d37f54bff8b4ed01501999cc0683f336f0bcb8c6902", size = 12754014 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/ac/7c/98ad14b3cf7a7987d3c6ef5fc83609458739f28a1a34a91a9bb1b12c5f8a/jupyterlab_myst-2.4.2-py3-none-any.whl", hash = "sha256:2aa406d4754dcd2ec4fe749b6a2e15f0bc8a6c5c8f6b549419583715d8146230", size = 2689537 },
+]
+
 [[package]]
 name = "jupyterlab-pygments"
 version = "0.3.0"
@@ -1132,15 +1177,15 @@ wheels = [
 
 [[package]]
 name = "pyproject-local-kernel"
-version = "0.12.0"
+version = "0.12.1"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "jupyter-client" },
     { name = "traitlets" },
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