From 00730b00e00ed759cf29e4414d4331de8e988967 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Fri, 18 Oct 2024 16:09:46 +0200 Subject: [PATCH] DX: define developer environment with `uv` (#11) Co-authored-by: GitHub --- .binder/postBuild | 11 + .binder/runtime.txt | 1 + .editorconfig | 2 +- .envrc | 3 +- .github/workflows/ci.yml | 16 +- .github/workflows/clean-caches.yml | 4 +- .github/workflows/lock.yml | 22 + .github/workflows/pr-linting.yml | 14 + .gitignore | 1 - .pre-commit-config.yaml | 39 +- .python-version | 1 + .vscode/extensions.json | 2 + .vscode/settings.json | 4 +- README.md | 1 + environment.yml | 10 - pyproject.toml | 23 +- src/jax_benchmark/__init__.py | 2 - src/jax_benchmark/dot_product.py | 2 - uv.lock | 2087 ++++++++++++++++++++++++++++ visualize-benchmark.ipynb | 2 - 20 files changed, 2187 insertions(+), 60 deletions(-) create mode 100755 .binder/postBuild create mode 100644 .binder/runtime.txt create mode 100644 .github/workflows/lock.yml create mode 100644 .github/workflows/pr-linting.yml create mode 100644 .python-version delete mode 100644 environment.yml create mode 100644 uv.lock diff --git a/.binder/postBuild b/.binder/postBuild new file mode 100755 index 0000000..48d530c --- /dev/null +++ b/.binder/postBuild @@ -0,0 +1,11 @@ +#!/bin/bash +set -ex +curl -LsSf https://astral.sh/uv/install.sh | sh +source $HOME/.cargo/env +uv export \ + --extra jupyter \ + > requirements.txt +uv pip install \ + --requirement requirements.txt \ + --system +uv cache clean diff --git a/.binder/runtime.txt b/.binder/runtime.txt new file mode 100644 index 0000000..d2aca3a --- /dev/null +++ b/.binder/runtime.txt @@ -0,0 +1 @@ +python-3.12 diff --git a/.editorconfig b/.editorconfig index dfbf43e..cadbffd 100644 --- a/.editorconfig +++ b/.editorconfig @@ -13,5 +13,5 @@ indent_size = unset [*.{py,toml}] indent_size = 4 -[setup.cfg] +[uv.lock] indent_size = 4 diff --git a/.envrc b/.envrc index cce3aa5..41fd2ca 100644 --- a/.envrc +++ b/.envrc @@ -1 +1,2 @@ -layout anaconda +uv sync --all-extras --quiet +source .venv/bin/activate diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 3e914e9..a1b164a 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -1,5 +1,13 @@ name: CI +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: |- + ${{ github.ref != format('refs/heads/{0}', github.event.repository.default_branch) }} + +env: + PYTHONHASHSEED: "0" + on: push: branches: @@ -12,9 +20,15 @@ on: - epic/* - "[0-9]+.[0-9]+.x" workflow_dispatch: + inputs: + specific-pip-packages: + description: Run CI with specific pip packages + required: false + type: string jobs: style: + if: inputs.specific-pip-packages == '' secrets: token: ${{ secrets.PAT }} - uses: ComPWA/actions/.github/workflows/pre-commit.yml@v1 + uses: ComPWA/actions/.github/workflows/pre-commit.yml@v2 diff --git a/.github/workflows/clean-caches.yml b/.github/workflows/clean-caches.yml index a66c407..7986e0c 100644 --- a/.github/workflows/clean-caches.yml +++ b/.github/workflows/clean-caches.yml @@ -14,9 +14,9 @@ on: jobs: cleanup: name: Remove caches - runs-on: ubuntu-22.04 + runs-on: ubuntu-24.04 steps: - - uses: ComPWA/actions/clean-caches@v1 + - uses: ComPWA/actions/clean-caches@v2 with: GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} ref: ${{ inputs.ref }} diff --git a/.github/workflows/lock.yml b/.github/workflows/lock.yml new file mode 100644 index 0000000..6a13858 --- /dev/null +++ b/.github/workflows/lock.yml @@ -0,0 +1,22 @@ +name: Update + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: |- + ${{ github.ref != format('refs/heads/{0}', github.event.repository.default_branch) }} + +on: + pull_request: + branches: + - main + - epic/* + paths: + - .pre-commit-config.yaml + - uv.lock + workflow_dispatch: + +jobs: + lock: + uses: ComPWA/actions/.github/workflows/lock.yml@v2 + secrets: + token: ${{ secrets.PAT }} diff --git a/.github/workflows/pr-linting.yml b/.github/workflows/pr-linting.yml new file mode 100644 index 0000000..44dc9e4 --- /dev/null +++ b/.github/workflows/pr-linting.yml @@ -0,0 +1,14 @@ +name: PR linting +on: + pull_request: + types: + - edited + - labeled + - opened + - reopened + - synchronize + - unlabeled + +jobs: + lint-pr: + uses: ComPWA/actions/.github/workflows/pr-linting.yml@v2 diff --git a/.gitignore b/.gitignore index aba99db..cbf6f5c 100644 --- a/.gitignore +++ b/.gitignore @@ -3,5 +3,4 @@ build/ *.egg-info/ *.svg benchmark-results/ -condaenv.*.requirements.txt node_modules/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index ad60dc1..a9a0fba 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,10 +1,9 @@ ci: - autoupdate_commit_msg: "MAINT: autoupdate pre-commit hooks" - autoupdate_schedule: quarterly # already done by requirements-cron.yml + autoupdate_commit_msg: "MAINT: update lock files" + autoupdate_schedule: quarterly skip: - - prettier - pyright - - taplo + - uv-lock repos: - repo: meta @@ -13,21 +12,18 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.3.18 + rev: 0.5.0 hooks: - id: colab-toc-visible - id: check-dev-files args: - - --dev-python-version=3.12 - - --no-github-actions - - --no-gitpod - - --no-prettierrc + - --no-cd - --no-pypi - --repo-name=jax-mini-benchmark - id: remove-empty-tags - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.5.6 + rev: v0.7.0 hooks: - id: ruff args: [--fix] @@ -36,7 +32,7 @@ repos: types_or: [python, pyi, jupyter] - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 + rev: v5.0.0 hooks: - id: check-ast - id: check-case-conflict @@ -49,15 +45,15 @@ repos: - id: mixed-line-ending - id: trailing-whitespace - - repo: https://github.com/pre-commit/mirrors-prettier - rev: v4.0.0-alpha.8 + - repo: https://github.com/ComPWA/prettier-pre-commit + rev: v3.3.3 hooks: - id: prettier - - repo: https://github.com/ComPWA/mirrors-taplo - rev: v0.8.1 + - repo: https://github.com/ComPWA/taplo-pre-commit + rev: v0.9.3 hooks: - - id: taplo + - id: taplo-format - repo: https://github.com/pappasam/toml-sort rev: v0.23.1 @@ -67,7 +63,7 @@ repos: - --in-place - repo: https://github.com/editorconfig-checker/editorconfig-checker.python - rev: 2.7.3 + rev: 3.0.3 hooks: - id: editorconfig-checker name: editorconfig @@ -77,7 +73,12 @@ repos: .*\.py )$ - - repo: https://github.com/ComPWA/mirrors-pyright - rev: v1.1.374 + - repo: https://github.com/ComPWA/pyright-pre-commit + rev: v1.1.385 hooks: - id: pyright + + - repo: https://github.com/astral-sh/uv-pre-commit + rev: 0.4.24 + hooks: + - id: uv-lock diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..e4fba21 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.12 diff --git a/.vscode/extensions.json b/.vscode/extensions.json index a147e85..701164c 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -4,7 +4,9 @@ "eamodio.gitlens", "editorconfig.editorconfig", "esbenp.prettier-vscode", + "github.vscode-github-actions", "github.vscode-pull-request-github", + "mhutchie.git-graph", "ms-python.python", "ms-python.vscode-pylance", "ms-toolsai.jupyter", diff --git a/.vscode/settings.json b/.vscode/settings.json index 540c8b2..d9af99f 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -22,12 +22,14 @@ "notebook.source.organizeImports": "explicit" }, "notebook.formatOnSave.enabled": true, - "python.analysis.typeCheckingMode": "strict", "python.terminal.activateEnvironment": false, "redhat.telemetry.enabled": false, "rewrap.wrappingColumn": 88, "ruff.enable": true, "ruff.importStrategy": "fromEnvironment", "ruff.organizeImports": true, + "search.exclude": { + "**/uv.lock": true + }, "telemetry.telemetryLevel": "off" } diff --git a/README.md b/README.md index fff52a7..1888ef9 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ # Mini benchmark for JAX [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff) +[![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)](https://github.com/astral-sh/uv) [![code style: prettier](https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square)](https://github.com/prettier/prettier) This package provides a set of benchmark scripts that can be used to profile JAX performance on a varying number of CPU cores. JAX does not provide control over the number of cores it uses, so a common trick is to work do this with [`taskset`](https://man7.org/linux/man-pages/man1/taskset.1.html). diff --git a/environment.yml b/environment.yml deleted file mode 100644 index d7c0c5e..0000000 --- a/environment.yml +++ /dev/null @@ -1,10 +0,0 @@ -name: jax-mini-benchmark -channels: - - defaults -dependencies: - - python==3.12.* - - pip - - pip: - - -e .[dev] -variables: - PRETTIER_LEGACY_CLI: "1" diff --git a/pyproject.toml b/pyproject.toml index ecc73d8..a8d0f4c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,20 +9,6 @@ requires = [ authors = [ {name = "Common Partial Wave Analysis", email = "compwa-admin@ep1.rub.de"}, ] -classifiers = [ - "Development Status :: 3 - Alpha", - "Intended Audience :: Developers", - "Intended Audience :: Science/Research", - "License :: OSI Approved :: MIT License", - "Natural Language :: English", - "Operating System :: OS Independent", - "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11", - "Programming Language :: Python :: 3.9", - "Programming Language :: Python", - "Topic :: Software Development", - "Typing :: Typed", -] dependencies = [ "PyYAML", "jax", @@ -47,7 +33,7 @@ maintainers = [ {name = "Common Partial Wave Analysis", email = "compwa-admin@ep1.rub.de"}, ] name = "jax-mini-benchmark" -requires-python = ">=3.9" +requires-python = ">=3.12" [project.optional-dependencies] dev = [ @@ -64,7 +50,7 @@ jupyter = [ "python-lsp-server[rope]", ] sty = [ - "pre-commit", + "pre-commit-uv", "ruff", ] @@ -88,6 +74,8 @@ jax_benchmark = ["py.typed"] where = ["src"] [tool.setuptools_scm] +local_scheme = "no-local-version" +version_scheme = "only-version" write_to = "src/jax_benchmark/_version.py" [tool.pyright] @@ -98,6 +86,7 @@ exclude = [ "**/.mypy_cache", "**/.pytest_cache", "**/.tox", + "**/.venv/", "**/__pycache__", "**/_build", ".ruff_cache/**", @@ -116,7 +105,6 @@ extend-include = ["*.ipynb"] preview = true show-fixes = 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