diff --git a/.binder/apt.txt b/.binder/apt.txt new file mode 100644 index 00000000..4d956093 --- /dev/null +++ b/.binder/apt.txt @@ -0,0 +1 @@ +graphviz diff --git a/.binder/postBuild b/.binder/postBuild new file mode 100755 index 00000000..71195648 --- /dev/null +++ b/.binder/postBuild @@ -0,0 +1,12 @@ +#!/bin/bash +set -ex +curl -LsSf https://astral.sh/uv/install.sh | sh +source $HOME/.cargo/env +uv export \ + --extra jupyter \ + --extra notebooks \ + > requirements.txt +uv pip install \ + --requirement requirements.txt \ + --system +uv cache clean diff --git a/.binder/runtime.txt b/.binder/runtime.txt new file mode 100644 index 00000000..55090899 --- /dev/null +++ b/.binder/runtime.txt @@ -0,0 +1 @@ +python-3.10 diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml index 2f66c9ab..cf34984b 100644 --- a/.github/workflows/cd.yml +++ b/.github/workflows/cd.yml @@ -9,9 +9,9 @@ on: jobs: milestone: if: startsWith(github.ref, 'refs/tags') - uses: ComPWA/actions/.github/workflows/close-milestone.yml@v1 + uses: ComPWA/actions/.github/workflows/close-milestone.yml@v2 package-name: - uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@v1 + uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@v2 pypi: environment: name: PyPI @@ -24,9 +24,9 @@ jobs: id-token: write runs-on: ubuntu-24.04 steps: - - uses: ComPWA/actions/build-pypi-distribution@v1 + - uses: ComPWA/actions/build-pypi-distribution@v2 - uses: pypa/gh-action-pypi-publish@release/v1 push: if: startsWith(github.ref, 'refs/tags') && !github.event.release.prerelease secrets: inherit - uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@v1 + uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@v2 diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5a5998fd..89abd367 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -28,7 +28,7 @@ on: jobs: doc: - uses: ComPWA/actions/.github/workflows/ci-docs.yml@v1 + uses: ComPWA/actions/.github/workflows/ci-docs.yml@v2 permissions: pages: write id-token: write @@ -37,7 +37,7 @@ jobs: python-version: "3.10" specific-pip-packages: ${{ inputs.specific-pip-packages }} pytest: - uses: ComPWA/actions/.github/workflows/pytest.yml@v1 + uses: ComPWA/actions/.github/workflows/pytest.yml@v2 with: additional-extras: all coverage-target: tensorwaves @@ -48,6 +48,6 @@ jobs: if: inputs.specific-pip-packages == '' secrets: token: ${{ secrets.PAT }} - uses: ComPWA/actions/.github/workflows/pre-commit.yml@v1 + uses: ComPWA/actions/.github/workflows/pre-commit.yml@v2 with: python-version: "3.10" diff --git a/.github/workflows/clean-caches.yml b/.github/workflows/clean-caches.yml index 939e1361..7986e0cf 100644 --- a/.github/workflows/clean-caches.yml +++ b/.github/workflows/clean-caches.yml @@ -16,7 +16,7 @@ jobs: name: Remove caches runs-on: ubuntu-24.04 steps: - - uses: ComPWA/actions/clean-caches@v1 + - uses: ComPWA/actions/clean-caches@v2 with: GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} ref: ${{ inputs.ref }} diff --git a/.github/workflows/requirements.yml b/.github/workflows/lock.yml similarity index 80% rename from .github/workflows/requirements.yml rename to .github/workflows/lock.yml index e1639791..e6a5c10a 100644 --- a/.github/workflows/requirements.yml +++ b/.github/workflows/lock.yml @@ -1,4 +1,4 @@ -name: Requirements +name: Update concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -12,12 +12,13 @@ on: - epic/* paths: - .pre-commit-config.yaml + - uv.lock schedule: - cron: "0 3 7 */1 *" workflow_dispatch: jobs: - requirements: - uses: ComPWA/actions/.github/workflows/requirements.yml@v1 + lock: + uses: ComPWA/actions/.github/workflows/lock.yml@v2 secrets: token: ${{ secrets.PAT }} diff --git a/.github/workflows/pr-linting.yml b/.github/workflows/pr-linting.yml index 0fab8410..44dc9e42 100644 --- a/.github/workflows/pr-linting.yml +++ b/.github/workflows/pr-linting.yml @@ -11,4 +11,4 @@ on: jobs: lint-pr: - uses: ComPWA/actions/.github/workflows/pr-linting.yml@v1 + uses: ComPWA/actions/.github/workflows/pr-linting.yml@v2 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 158d0ed4..c03feda1 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -5,6 +5,7 @@ ci: - check-jsonschema - mypy - pyright + - uv-lock repos: - repo: meta @@ -12,18 +13,17 @@ repos: - id: check-hooks-apply - id: check-useless-excludes - - repo: /data/local/redeboer/work/ComPWA/policy - rev: 565f235682bdafe8ea5c0d7e88220c95a919a26f + - repo: https://github.com/ComPWA/policy + rev: 0.5.0rc8 hooks: - id: check-dev-files args: - --ci-test-extras=all - --dev-python-version=3.10 - --doc-apt-packages=graphviz - - --no-prettierrc - - --pin-requirements=monthly - --repo-name=tensorwaves - --repo-title=TensorWaves + - --update-lock-files=monthly - id: colab-toc-visible - id: fix-nbformat-version - id: remove-empty-tags @@ -62,7 +62,7 @@ repos: metadata.vscode - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.6.4 + rev: v0.6.9 hooks: - id: ruff args: [--fix] @@ -71,7 +71,7 @@ repos: types_or: [python, pyi, jupyter] - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 + rev: v5.0.0 hooks: - id: check-ast - id: check-case-conflict @@ -115,7 +115,7 @@ repos: - --in-place - repo: https://github.com/python-jsonschema/check-jsonschema - rev: 0.29.2 + rev: 0.29.4 hooks: - id: check-jsonschema name: Check CITATION.cff @@ -128,7 +128,7 @@ repos: pass_filenames: false - repo: https://github.com/streetsidesoftware/cspell-cli - rev: v8.13.3 + rev: v8.15.1 hooks: - id: cspell @@ -154,11 +154,11 @@ repos: - python - repo: https://github.com/ComPWA/pyright-pre-commit - rev: v1.1.379 + rev: v1.1.384 hooks: - id: pyright - repo: https://github.com/astral-sh/uv-pre-commit - rev: 0.4.20 + rev: 0.4.22 hooks: - id: uv-lock diff --git a/.readthedocs.yml b/.readthedocs.yml index 2c6a8796..c72eb34c 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -4,16 +4,17 @@ build: os: ubuntu-24.04 tools: python: "3.10" - apt_packages: - - graphviz - jobs: - post_install: - - python -m pip install 'uv>=0.2.0' - - python -m uv sync --extra=doc -formats: - - htmlzip - -sphinx: - builder: dirhtml - configuration: docs/conf.py - fail_on_warning: true + commands: + - |- + export PIXI_HOME=$READTHEDOCS_VIRTUALENV_PATH + curl -fsSL https://pixi.sh/install.sh | bash + pixi global install graphviz uv + - |- + export UV_LINK_MODE=copy + uv run \ + --extra doc \ + --locked \ + --with tox \ + tox -e doc + mkdir -p $READTHEDOCS_OUTPUT + mv docs/_build/html $READTHEDOCS_OUTPUT diff --git a/README.md b/README.md index 20f6465f..724a1ee1 100644 --- a/README.md +++ b/README.md @@ -20,6 +20,7 @@ [![Spelling checked](https://img.shields.io/badge/cspell-checked-brightgreen.svg)](https://github.com/streetsidesoftware/cspell/tree/master/packages/cspell) [![code style: prettier](https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square)](https://github.com/prettier/prettier) [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff) +[![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)](https://github.com/astral-sh/uv) TensorWaves is a fitter package that optimizes mathematical models to data samples. The models can be any _symbolic_ mathematical expression that is then converted to any diff --git a/pyproject.toml b/pyproject.toml index 1b6003c7..06168d9b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -64,17 +64,14 @@ dev = [ "tensorwaves[jupyter]", "tensorwaves[sty]", "tensorwaves[test]", - "tox >=1.9", # for skip_install, use_develop + "tox", ] doc = [ - "Sphinx >=3", - "black", - "ipympl", "jupyter", "matplotlib", - "myst-nb >=0.14", # nb_ configuration prefixes - "pandas", - "sphinx-api-relink >=0.0.4", + "myst-nb", + "sphinx", + "sphinx-api-relink", "sphinx-book-theme", "sphinx-codeautolink[ipython]", "sphinx-comments", @@ -83,11 +80,12 @@ doc = [ "sphinx-thebe", "sphinx-togglebutton", "sphobjinv", - "tensorwaves[all]", + "tensorwaves[notebooks]", ] jax = [ "jax", "jaxlib", + "tensorwaves[all]", ] jupyter = [ "jupyterlab", @@ -99,6 +97,11 @@ jupyter = [ "python-lsp-server[rope]", "tensorwaves[doc]", ] +notebooks = [ + "black", + "ipympl", + "pandas", +] numba = [ "numba", 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