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There are many comparison blocks in the maf file, why can't we merge them into one very long comparison block？ #1586

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helloworldABCD1234 opened this issue Jan 14, 2025 · 1 comment

helloworldABCD1234 commented Jan 14, 2025

There are many comparison blocks in the maf file, why can't we merge them into one very long comparison block？

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diekhans commented Jan 14, 2025 via email

helloworldABCD1234 ***@***.***> writes:

There are many comparison blocks in the maf file, why can't we merge them into one very long comparison block？

The MAF format requires the sequence for each species line to be linear, so any type of rearrange or insertion needs to break a MAF block.

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