IndexError: list index out of range when run QC

[yerry77]

**** Parsing Isoforms....
Running calculation of TSS ratio
Traceback (most recent call last):
File "/data/p/SQANTI3/SQANTI3-5.2.1/sqanti3_qc_2.py", line 2577, in
main()
File "/data/p/SQANTI3/SQANTI3-5.2.1/sqanti3_qc_2.py", line 2560, in main
run(args)
File "/data/p/SQANTI3/SQANTI3-5.2.1/sqanti3_qc_2.py", line 1875, in run
isoforms_info, ratio_TSS_dict = isoformClassification(args, isoforms_by_chr, refs_1exon_by_chr, refs_exons_by_chr, junctions_by_chr, junctions_by_gene, start_ends_by_gene, genome_dict, indelsJunc, orfDict, corrGTF, star_out, star_index, SJcovNames, SJcovInfo)
File "/data/p/SQANTI3/SQANTI3-5.2.1/sqanti3_qc_2.py", line 1545, in isoformClassification
inside_bed, outside_bed = get_TSS_bed(corrGTF, chr_order)
File "/data/p/SQANTI3/SQANTI3-5.2.1/utilities/short_reads.py", line 127, in get_TSS_bed
strand=str(loc[2])
IndexError: list index out of range
I have remove the '.' of strand but it doesn't work.

[carolinamonzo]

This is under revision in the issues section. The user is using an old version of SQANTI3 and maintainers haven't been able to reproduce the error yet.