diff --git a/README.md b/README.md index 7584617..daa6d4e 100644 --- a/README.md +++ b/README.md @@ -35,7 +35,7 @@ ![plot](./img/plot.png) -Current version for PILOT is 2.0.4 +Current version for PILOT is 2.0.6 ## Installation The easiest way to install PILOT and the required packages is using the following way: @@ -44,8 +44,6 @@ The easiest way to install PILOT and the required packages is using the followin conda create --name PILOT python=3.11.5 r-base conda activate PILOT -conda install -c conda-forge rpy2 -conda install jupyter pip install pilotpy ``` Once you've completed these steps, you can proceed to run the tutorials and explore the features of PILOT. diff --git a/pilotpy/__init__.py b/pilotpy/__init__.py index 2e756a7..3c0193e 100644 --- a/pilotpy/__init__.py +++ b/pilotpy/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2.0.4" +__version__ = "2.0.6" __author__ = 'Mehdi Joodaki' __credits__ = 'Institute for Computational Genomics' diff --git a/setup.py b/setup.py index 25877d7..a0d59f6 100644 --- a/setup.py +++ b/setup.py @@ -2,33 +2,34 @@ setup( name='pilotpy', - version='2.0.4', + version='2.0.6', author='Mehdi Joodaki', author_email='judakimehdi@gmail.com', url='https://github.com/CostaLab/PILOT', - install_requires=[ - "cycler", - "joypy", - "leidenalg", - "numpy", - "matplotlib", - "pandas", - "plotly", - "plotnine", - "POT", - "pydiffmap", - "scanpy", - "scikit_learn", - "scikit_network", - "scipy", - "seaborn", - "shap", - "statsmodels", - "elpigraph-python", - "adjustText", - "gprofiler-official", - ], - packages=find_packages() + "cycler>=0.11.0,<0.12.0", + "joypy>=0.2.6,<0.3.0", + "leidenalg>=0.10.1,<0.11.0", + "numpy>=1.24.4,<1.25.0", + "matplotlib>=3.8.0,<3.9.0", + "pandas>=2.0.3,<2.1.0", + "plotly>=5.22.0,<5.23.0", + "plotnine>=0.12.3,<0.13.0", + "pot>=0.9.1,<0.10.0", + "pydiffmap>=0.2.0.1,<0.3.0", + "scanpy>=1.9.5,<1.10.0", + "scikit-learn>=1.3.0,<1.4.0", + "scikit-network>=0.31.0,<0.32.0", + "scipy>=1.11.2,<1.12.0", + "seaborn>=0.12.2,<0.13.0", + "shap>=0.42.1,<0.43.0", + "statsmodels>=0.14.0,<0.15.0", + "elpigraph-python>=0.3.1,<0.4.0", + "adjusttext>=0.8,<0.9", + "gprofiler-official>=1.0.0,<1.1.0", + "rpy2==3.5.11", + ], + packages=find_packages() ) +