setup.py

#!/usr/bin/env python
"""Notes
-----
SCALCS project is pure Python implementation of Q-Matrix formalism
for ion channel research. To learn more about kinetic analysis of ion
channels see the references below.

References
----------
CH82: Colquhoun D, Hawkes AG (1982)
On the stochastic properties of bursts of single ion channel openings
and of clusters of bursts. Phil Trans R Soc Lond B 300, 1-59.

HJC92: Hawkes AG, Jalali A, Colquhoun D (1992)
Asymptotic distributions of apparent open times and shut times in a
single channel record allowing for the omission of brief events.
Phil Trans R Soc Lond B 337, 383-404.

CH95a: Colquhoun D, Hawkes AG (1995a)
The principles of the stochastic interpretation of ion channel mechanisms.
In: Single-channel recording. 2nd ed. (Eds: Sakmann B, Neher E)
Plenum Press, New York, pp. 397-482.

CH95b: Colquhoun D, Hawkes AG (1995b)
A Q-Matrix Cookbook.
In: Single-channel recording. 2nd ed. (Eds: Sakmann B, Neher E)
Plenum Press, New York, pp. 589-633.

CHS96: Colquhoun D, Hawkes AG, Srodzinski K (1996)
Joint distributions of apparent open and shut times of single-ion channels
and maximum likelihood fitting of mechanisms.
Phil Trans R Soc Lond A 354, 2555-2590.
"""

# Modified from numpy's setup.py

DOCLINES = __doc__.split("\n")

import os
import sys

CLASSIFIERS = """\
Development Status :: 2 - Pre-Alpha
Intended Audience :: Science/Research
Intended Audience :: Developers
License :: OSI Approved :: GNU General Public License (GPL)
Programming Language :: Python
Topic :: Scientific/Engineering
Operating System :: Microsoft :: Windows
Operating System :: POSIX
Operating System :: Unix
Operating System :: MacOS
"""

NAME                = 'SCALCS'
AUTHOR              = "Remigijus Lape, Christoph Schmidt-Hieber et al."
AUTHOR_EMAIL        = "r.lape@ucl.ac.uk"
MAINTAINER          = "Remigijus Lape"
MAINTAINER_EMAIL    = "r.lape@ucl.ac.uk"
DESCRIPTION         = DOCLINES[0]
LONG_DESCRIPTION    = "\n".join(DOCLINES[2:])
PACKAGES            = ["scalcs"]
SCRIPTS             = ['demo-dc.py', 'demo-rcj.py']
URL                 = "https://github.com/DCPROGS/SCALCS"
DOWNLOAD_URL        = "https://github.com/DCPROGS/SCALCS/tarball/master"
LICENSE             = 'GPL2'
CLASSIFIERS         = filter(None, CLASSIFIERS.split('\n'))
PLATFORMS           = ["Windows", "Linux", "Solaris", "Mac OS-X", "Unix"]
MAJOR               = 0
MINOR               = 3
MICRO               = 0
ISRELEASED          = True
VERSION             = '%d.%d.%d' % (MAJOR, MINOR, MICRO)

# BEFORE importing distutils, remove MANIFEST. distutils doesn't properly
# update it when the contents of directories change.
if os.path.exists('MANIFEST'): os.remove('MANIFEST')

def write_version_py(filename='scalcs/version.py'):
    cnt = """
# THIS FILE IS GENERATED FROM SCALCS SETUP.PY
short_version = '%(version)s'
version = '%(version)s'
full_version = '%(full_version)s'
release = %(isrelease)s

if not release:
    version = full_version
"""
    FULLVERSION = VERSION

    a = open(filename, 'w')
    try:
        a.write(cnt % {'version': VERSION,
                       'full_version' : FULLVERSION,
                       'isrelease': str(ISRELEASED)})
    finally:
        a.close()

def setup_package():

    # Perform 2to3 if needed
    local_path = os.path.dirname(os.path.abspath(sys.argv[0]))
    src_path = local_path

    old_path = os.getcwd()
    os.chdir(src_path)
    sys.path.insert(0, src_path)

    # Rewrite the version file everytime
    write_version_py()

    # Run build
    from distutils.core import setup

    try:
        setup(
            name=NAME,
            version=VERSION,
            packages=PACKAGES,
            scripts=SCRIPTS,
            author=AUTHOR,
            author_email=AUTHOR_EMAIL,
            maintainer=MAINTAINER,
            maintainer_email=MAINTAINER_EMAIL,
            description=DESCRIPTION,
            long_description=LONG_DESCRIPTION,
            url=URL,
            download_url=DOWNLOAD_URL,
            license=LICENSE,
            classifiers=CLASSIFIERS,
            platforms=PLATFORMS)
    finally:
        del sys.path[0]
        os.chdir(old_path)
    return

if __name__ == '__main__':
    setup_package()