diff --git a/config/conf.json b/config/conf.json index 23acec05..8d24d6de 100644 --- a/config/conf.json +++ b/config/conf.json @@ -26,7 +26,7 @@ "tidyverse" ] }, - "version" : "2.1.11", + "version" : "2.1.12", "automated_flags" : { "generate_docs" : true, "include_in_ui" : true, @@ -47,7 +47,7 @@ "hail" ] }, - "version" : "1.0.26", + "version" : "1.0.27", "automated_flags" : { "generate_docs" : true, "include_in_ui" : true, @@ -68,7 +68,7 @@ "scikit-learn" ] }, - "version" : "1.0.15", + "version" : "1.0.16", "automated_flags" : { "generate_docs" : true, "include_in_ui" : true, @@ -86,7 +86,7 @@ "packages" : { }, - "version" : "1.0.14", + "version" : "1.0.15", "automated_flags" : { "generate_docs" : true, "include_in_ui" : false, @@ -104,7 +104,7 @@ "packages" : { }, - "version" : "2.1.10", + "version" : "2.1.11", "automated_flags" : { "include_in_ui" : false, "generate_docs" : true, @@ -124,7 +124,7 @@ "packages" : { }, - "version" : "2.2.13", + "version" : "2.2.14", "automated_flags" : { "include_in_ui" : true, "generate_docs" : true, @@ -143,7 +143,7 @@ "packages" : { }, - "version" : "2.1.22", + "version" : "2.1.23", "automated_flags" : { "include_in_ui" : false, "generate_docs" : false, diff --git a/terra-jupyter-aou/CHANGELOG.md b/terra-jupyter-aou/CHANGELOG.md index 7709ec23..48a0b41f 100644 --- a/terra-jupyter-aou/CHANGELOG.md +++ b/terra-jupyter-aou/CHANGELOG.md @@ -1,3 +1,7 @@ +## 2.1.23 - 2023-06-15 + +- Update `terra-jupyter-base` to `1.0.15` + ## 2.1.22 - 2023-06-01T17:49:47.721962740Z - Update `terra-jupyter-r` to `2.1.10` diff --git a/terra-jupyter-aou/Dockerfile b/terra-jupyter-aou/Dockerfile index a3bec54b..afaf51ef 100644 --- a/terra-jupyter-aou/Dockerfile +++ b/terra-jupyter-aou/Dockerfile @@ -1,4 +1,4 @@ -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-gatk:2.2.12 +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-gatk:2.2.14 USER root diff --git a/terra-jupyter-base/CHANGELOG.md b/terra-jupyter-base/CHANGELOG.md index e1eedbc5..fda92bc5 100644 --- a/terra-jupyter-base/CHANGELOG.md +++ b/terra-jupyter-base/CHANGELOG.md @@ -1,3 +1,7 @@ +## 1.0.15 - 2023-06-15 + +- Bump version to rebuild base image with latest jupyter-notebook-utils. + ## 1.0.14 - 2023-03-13T17:26:34.128391Z - Include `jupyter lab build` step diff --git a/terra-jupyter-bioconductor/CHANGELOG.md b/terra-jupyter-bioconductor/CHANGELOG.md index f4a06047..daea7d08 100644 --- a/terra-jupyter-bioconductor/CHANGELOG.md +++ b/terra-jupyter-bioconductor/CHANGELOG.md @@ -1,3 +1,7 @@ +## 2.1.12 - 2023-06-15 + +- Update `terra-jupyter-base` to `1.0.15` + ## 2.1.11 - 2023-06-01T17:49:47.622531112Z - Update `terra-jupyter-r` to `2.1.10` diff --git a/terra-jupyter-bioconductor/Dockerfile b/terra-jupyter-bioconductor/Dockerfile index 4bc5e08d..017953f8 100644 --- a/terra-jupyter-bioconductor/Dockerfile +++ b/terra-jupyter-bioconductor/Dockerfile @@ -1 +1 @@ -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.10 +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.11 diff --git a/terra-jupyter-gatk-ovtf/CHANGELOG.md b/terra-jupyter-gatk-ovtf/CHANGELOG.md index bb7394fa..2bcee948 100644 --- a/terra-jupyter-gatk-ovtf/CHANGELOG.md +++ b/terra-jupyter-gatk-ovtf/CHANGELOG.md @@ -1,3 +1,7 @@ +## 0.2.11 - 2023-06-15 + +- Update `terra-jupyter-base` to `1.0.15` + ## 0.2.10 - 2023-06-01T17:49:47.736670188Z - Update `terra-jupyter-r` to `2.1.10` diff --git a/terra-jupyter-gatk-ovtf/Dockerfile b/terra-jupyter-gatk-ovtf/Dockerfile index 6b820ec1..7a6abf60 100644 --- a/terra-jupyter-gatk-ovtf/Dockerfile +++ b/terra-jupyter-gatk-ovtf/Dockerfile @@ -1,6 +1,6 @@ -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.13 AS python +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.14 AS python -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.10 +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.11 # copy everything pip installed from the python image COPY --from=python /opt/conda/lib/python3.7/site-packages /opt/conda/lib/python3.7/site-packages diff --git a/terra-jupyter-gatk/CHANGELOG.md b/terra-jupyter-gatk/CHANGELOG.md index df05706f..aba46c0c 100644 --- a/terra-jupyter-gatk/CHANGELOG.md +++ b/terra-jupyter-gatk/CHANGELOG.md @@ -1,3 +1,7 @@ +## 2.2.14 - 2023-06-15 + +- Update `terra-jupyter-base` to `1.0.15` + ## 2.2.13 - 2023-06-01T17:49:47.668283846Z - Update `terra-jupyter-r` to `2.1.10` diff --git a/terra-jupyter-gatk/Dockerfile b/terra-jupyter-gatk/Dockerfile index 86633cea..afc46ce0 100644 --- a/terra-jupyter-gatk/Dockerfile +++ b/terra-jupyter-gatk/Dockerfile @@ -1,6 +1,6 @@ -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.15 AS python +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.16 AS python -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.10 +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.11 USER root diff --git a/terra-jupyter-hail/CHANGELOG.md b/terra-jupyter-hail/CHANGELOG.md index 3dd0dbe2..aec66ec9 100644 --- a/terra-jupyter-hail/CHANGELOG.md +++ b/terra-jupyter-hail/CHANGELOG.md @@ -1,3 +1,7 @@ +## 1.0.27 - 2023-06-15 + +- Update `terra-jupyter-base` to `1.0.15` + ## 1.0.26 - 2023-03-13T17:26:34.162828Z - Update `terra-jupyter-base` to `1.0.14` diff --git a/terra-jupyter-hail/Dockerfile b/terra-jupyter-hail/Dockerfile index e5118944..de56c192 100644 --- a/terra-jupyter-hail/Dockerfile +++ b/terra-jupyter-hail/Dockerfile @@ -1,4 +1,4 @@ -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.15 +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.16 USER root ENV PIP_USER=false diff --git a/terra-jupyter-python/CHANGELOG.md b/terra-jupyter-python/CHANGELOG.md index b5888365..ef418bb9 100644 --- a/terra-jupyter-python/CHANGELOG.md +++ b/terra-jupyter-python/CHANGELOG.md @@ -1,3 +1,7 @@ +## 1.0.16 - 2023-06-15 + +- Update `terra-jupyter-base` to `1.0.15` + ## 1.0.15 - 2023-03-13T17:26:34.179905Z - Update `terra-jupyter-base` to `1.0.14` diff --git a/terra-jupyter-python/Dockerfile b/terra-jupyter-python/Dockerfile index ed9a32f4..ff0a9450 100644 --- a/terra-jupyter-python/Dockerfile +++ b/terra-jupyter-python/Dockerfile @@ -1,4 +1,4 @@ -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.0.14 +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.0.15 USER root # This makes it so pip runs as root, not the user. ENV PIP_USER=false diff --git a/terra-jupyter-r/CHANGELOG.md b/terra-jupyter-r/CHANGELOG.md index c12d23cd..9566a6e8 100644 --- a/terra-jupyter-r/CHANGELOG.md +++ b/terra-jupyter-r/CHANGELOG.md @@ -1,3 +1,7 @@ +## 2.1.11 - 2023-06-15 + +- Bioconductor 3.17 release with R 4.3 + ## 2.1.10 - 2023-06-01T17:49:47.585402026Z - Bioconductor 3.17 release with R 4.3 diff --git a/terra-jupyter-r/Dockerfile b/terra-jupyter-r/Dockerfile index cdb5f208..52de2eea 100644 --- a/terra-jupyter-r/Dockerfile +++ b/terra-jupyter-r/Dockerfile @@ -1,4 +1,4 @@ -FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.0.14 +FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.0.15 USER root COPY scripts $JUPYTER_HOME/scripts