Account for empty runitem when saving provenance data (Github issue #… #806
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| name: CI | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/**' | |
| - '**.rst' | |
| - '**.md' | |
| pull_request: | |
| paths-ignore: | |
| - 'docs/**' | |
| - '**.rst' | |
| - '**.md' | |
| jobs: | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.13'] | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| exclude: | |
| - os: macos-latest | |
| python-version: '3.8' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install .[all] pytest | |
| - name: Install dcm2niix posix | |
| if: runner.os != 'Windows' | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| sudo apt update && sudo apt install qt6-base-dev | |
| mkdir dcm2niix_install/ && cd dcm2niix_install/ | |
| curl -fLO https://github.com/rordenlab/dcm2niix/releases/latest/download/dcm2niix_lnx.zip | |
| unzip dcm2niix*.zip | |
| echo "${{ github.workspace }}/dcm2niix_install/" >> $GITHUB_PATH | |
| elif [ "$RUNNER_OS" == "macOS" ]; then | |
| brew install dcm2niix | |
| fi | |
| - name: Install dcm2niix windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| curl -fLO https://github.com/rordenlab/dcm2niix/releases/latest/download/dcm2niix_win.zip | |
| Expand-Archive dcm2niix_win.zip | |
| Add-Content $env:GITHUB_PATH "${{ github.workspace }}/dcm2niix_win/" | |
| - name: Tests with pytest | |
| run: | | |
| pytest tests | |
| env: | |
| DUECREDIT_ENABLE: no |