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Minor tweak
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marcelzwiers committed Oct 3, 2023
1 parent 3f5c076 commit 3c283a2
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Showing 3 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion bidscoin/cli/_rawmapper.py
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Expand Up @@ -26,7 +26,7 @@ class CustomFormatter(argparse.ArgumentDefaultsHelpFormatter, argparse.RawDescri
' rawmapper myproject/raw -r -f ManufacturerModelName AcquisitionDate --dryrun\n'
' rawmapper myproject/raw -r -s sub-1*/* sub-2*/ses-mri01 --dryrun\n'
' rawmapper -f EchoTime -w *fMRI* myproject/raw\n ')
parser.add_argument('sourcefolder', help='The source folder with the raw data in sub-#/ses-#/series organisation')
parser.add_argument('sourcefolder', help='The source folder with the raw data in sub-#/ses-#/series organization')
parser.add_argument('-s','--sessions', help='Space separated list of selected sub-#/ses-# names / folders to be processed. Otherwise all sessions in the bidsfolder will be selected', nargs='+')
parser.add_argument('-f','--field', help='The fieldname(s) of the dicom attribute(s) used to rename or map the subid/sesid foldernames', default=['PatientComments', 'ImageComments'], nargs='+')
parser.add_argument('-w','--wildcard', help='The Unix style pathname pattern expansion that is used to select the series from which the dicomfield is being mapped (can contain wildcards)', default='*')
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4 changes: 2 additions & 2 deletions docs/preparation.rst
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@@ -1,5 +1,5 @@
Data preparation
================
Data organization
=================

Supported source data structures
--------------------------------
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2 changes: 1 addition & 1 deletion docs/utilities.rst
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Expand Up @@ -124,7 +124,7 @@ Another command-line utility that can be helpful in organizing your source data

positional arguments:
sourcefolder The source folder with the raw data in sub-#/ses-#/series
organisation
organization

optional arguments:
-h, --help show this help message and exit
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